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Series GSE247428 Query DataSets for GSE247428
Status Public on Nov 24, 2023
Title CTCF deletion alters the pluripotency and DNA methylation profile of human iPSCs
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation https://www.frontiersin.org/articles/10.3389/fcell.2023.1302448
Submission date Nov 09, 2023
Last update date Nov 25, 2023
Contact name Wolfgang Wagner
E-mail(s) wwagner@ukaachen.de
Phone +49 241 8088611
Organization name RWTH Aachen University
Department Helmholtz Institute for Biomedical Engineering
Lab Stem Cell Biology and Cellular Engineering
Street address Pauwelsstrasse 20
City Aachen
ZIP/Postal code 52074
Country Germany
 
Platforms (2)
GPL21145 Infinium MethylationEPIC
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (10)
GSM7889815 WT, iPSC_104
GSM7889816 WT, iPSC_102
GSM7889817 CTCF-del, 55
This SuperSeries is composed of the following SubSeries:
GSE247425 CTCF deletion alters the pluripotency and DNA methylation profile of human iPSCs (ChIP-Seq)
GSE247426 CTCF deletion alters the pluripotency and DNA methylation profile of human iPSCs (RNA-Seq)
GSE247427 CTCF deletion alters the pluripotency and DNA methylation profile of human iPSCs (methylation)
Relations
BioProject PRJNA1037537

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE247428_RAW.tar 1.1 Gb (http)(custom) TAR (of BIGWIG, IDAT, NARROWPEAK, SF)
SRA Run SelectorHelp

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