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| Status |
Public on May 01, 2024 |
| Title |
Nitric oxide inhibits Ten-eleven translocation DNA demethylase activity to regulate 5mC and 5hmC across the genome |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38645113 |
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| Submission date |
Nov 17, 2023 |
| Last update date |
May 02, 2024 |
| Contact name |
Douglas David Thomas |
| E-mail(s) |
ddthomas@uic.edu
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| Organization name |
University of Illinois Chicago
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| Department |
Pharmaceutical Sciences
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| Lab |
Thomas Lab
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| Street address |
900 S Ashland Ave
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| City |
Chicago |
| State/province |
Illinois |
| ZIP/Postal code |
60607 |
| Country |
USA |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (28)
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| GSM7906420 |
MDA-MB-231 5mC, Control, 10 days, rep1 |
| GSM7906421 |
MDA-MB-231 5mC5hmC, Control, 10 days, rep1 |
| GSM7906422 |
MDA-MB-231 5mC, Control, 10 days, rep2 |
| GSM7906423 |
MDA-MB-231 5mC5hmC, Control, 10 days, rep2 |
| GSM7906424 |
MDA-MB-231 5mC, DETA/NO, 10 days, rep1 |
| GSM7906425 |
MDA-MB-231 5mC5hmC, DETA/NO, 10 days, rep1 |
| GSM7906426 |
MDA-MB-231 5mC, DETA/NO, 10 days, rep2 |
| GSM7906427 |
MDA-MB-231 5mC5hmC, DETA/NO, 10 days, rep2 |
| GSM7906428 |
MDA-MB-468 5mC, Control, 10 days, rep1 |
| GSM7906429 |
MDA-MB-468 5mC5hmC, Control, 10 days, rep1 |
| GSM7906430 |
MDA-MB-468 5mC, Control, 10 days, rep2 |
| GSM7906431 |
MDA-MB-468 5mC5hmC, Control, 10 days, rep2 |
| GSM7906432 |
MDA-MB-468 5mC, DETA/NO, 10 days, rep1 |
| GSM7906433 |
MDA-MB-468 5mC5hmC, DETA/NO, 10 days, rep1 |
| GSM7906434 |
MDA-MB-468 5mC, DETA/NO, 10 days, rep2 |
| GSM7906435 |
MDA-MB-468 5mC5hmC, DETA/NO, 10 days, rep2 |
| GSM7906436 |
MDA-MB-231, Control, 10 days, rep1 |
| GSM7906437 |
MDA-MB-231, Control, 10 days, rep2 |
| GSM7906438 |
MDA-MB-231, Control, 10 days, rep3 |
| GSM7906439 |
MDA-MB-231, DETA/NO, 10 days, rep1 |
| GSM7906440 |
MDA-MB-231, DETA/NO, 10 days, rep2 |
| GSM7906441 |
MDA-MB-231, DETA/NO, 10 days, rep3 |
| GSM7906442 |
MDA-MB-468, Control, 10 days, rep1 |
| GSM7906443 |
MDA-MB-468, Control, 10 days, rep2 |
| GSM7906444 |
MDA-MB-468, Control, 10 days, rep3 |
| GSM7906445 |
MDA-MB-468, DETA/NO, 10 days, rep1 |
| GSM7906446 |
MDA-MB-468, DETA/NO, 10 days, rep2 |
| GSM7906447 |
MDA-MB-468, DETA/NO, 10 days, rep3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE248149 |
Nitric oxide inhibits Ten-eleven translocation DNA demethylase activity to regulate 5mC and 5hmC across the genome [oxRRBS] |
| GSE248150 |
Nitric oxide inhibits ten-eleven translocation DNA demethylase activity to regulate 5mC and 5hmC across the genome [RNA-seq] |
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| Relations |
| BioProject |
PRJNA1041827 |
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