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| Status |
Public on Feb 20, 2024 |
| Title |
Autophagy-Mediated Degradation of Integumentary Tapetum Is Critical for Embryo Pattern Formation |
| Organism |
Nicotiana tabacum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate molecular links and underlying mechanisms between autophagy in the integumentary tapetum and embryo pattern formation, we isolated embryos from wild-type plants, atg5 mutants, and atg5 mutants expressing proTPE8:ATG5-GFP for RNA-sequencing.
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| Overall design |
8-cell embryos from wild-type, atg5 mutants, and atg5 mutants expressing proTPE8:ATG5-GFP were collected for RNA-sequencing. Three independent biological replicates were performed for each genotype.
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| Contributor(s) |
Zhao P, Zhao L, Zhong Y |
| Citation(s) |
38538581 |
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| Submission date |
Nov 26, 2023 |
| Last update date |
Apr 04, 2024 |
| Contact name |
Peng Zhao |
| E-mail(s) |
pzhao2000@whu.edu.cn
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| Phone |
0086-027-87653144
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| Organization name |
Wuhan University
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| Department |
College of Life Sciences
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| Street address |
Luojia Hill
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| City |
Wuhan |
| ZIP/Postal code |
430072 |
| Country |
China |
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| Platforms (1) |
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| Samples (9)
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| GSM7918195 |
8-cell embryos, atg5 mutant replicate 1 |
| GSM7918196 |
8-cell embryos, atg5 mutant replicate 2 |
| GSM7918197 |
8-cell embryos, atg5 mutant replicate 3 |
| GSM7918198 |
8-cell embryos, atg5 mutants expressing proTPE8:8-cell embryos, atg5-GFP replicate 1 |
| GSM7918199 |
8-cell embryos, atg5 mutants expressing proTPE8:8-cell embryos, atg5-GFP replicate 2 |
| GSM7918200 |
8-cell embryos, atg5 mutants expressing proTPE8:8-cell embryos, atg5-GFP replicate 3 |
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| Relations |
| BioProject |
PRJNA1045268 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE248624_count.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
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