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| Status |
Public on Jul 11, 2024 |
| Title |
Identification of genes important during atrial myocardial morphogenesis |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Atrial cardiomyocytes undergo complex cellular behaviours after 72 hours post fertilization to build muscle structures. We aimed to identify the genes involved during this process, and therefore we seqeunced the RNA from 48 and 72 hpf atrial cardiomyocytes to uncover changes in the transcirptome that might regulate or trigger atrial morphogenesis after 72 hpf.
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for 48 and 72 hours post fertilization wild-type zebrafish atrial cardiomyocytes.
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| Contributor(s) |
Albu M, Gentile A, Gunawan F, Xu Y, Kikhi K, Guenther S, Stainier D |
| Citation(s) |
39289341 |
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| Submission date |
Dec 01, 2023 |
| Last update date |
Oct 09, 2024 |
| Contact name |
Stefan Günther |
| E-mail(s) |
stefan.guenther@mpi-bn.mpg.de
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| Organization name |
MPI for heart and lung research
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| Street address |
ludwigtr. 43
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| City |
bad nauheim |
| ZIP/Postal code |
61231 |
| Country |
Germany |
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| Platforms (1) |
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| Samples (6)
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| GSM7927516 |
Wild-type zebrafish atrial cardiomyocytes, 48 hours post fertilization, rep 1 |
| GSM7927517 |
Wild-type zebrafish atrial cardiomyocytes, 48 hours post fertilization, rep 2 |
| GSM7927518 |
Wild-type zebrafish atrial cardiomyocytes, 48 hours post fertilization, rep 3 |
| GSM7927519 |
Wild-type zebrafish atrial cardiomyocytes, 72 hours post fertilization, rep 1 |
| GSM7927520 |
Wild-type zebrafish atrial cardiomyocytes, 72 hours post fertilization, rep 2 |
| GSM7927521 |
Wild-type zebrafish atrial cardiomyocytes, 72 hours post fertilization, rep 3 |
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| Relations |
| BioProject |
PRJNA1047551 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE249149_matrix.txt.gz |
4.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
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