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Series GSE24988 Query DataSets for GSE24988
Status Public on Jun 01, 2011
Title Gene expression profiles based on Pulmonary Artery Pressures in Pulmonary Fibrosis
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Pulmonary Hypertension (PH) is a frequent complication of Pulmonary Fibrosis (PF). PH can be seen in PF in the abscence of hypoxemia, irrespective of the degree of fibrosis. At the same time, a consistent number of patients with advanced PF never develop PH. The pathogenesis of PH secondary to PF remains unclear. PF patients are often referred to lung transplantation, but they present a higher incidence of pimary graft dysfunction than other diseases. The cause of this is unknown, and the relationship with PH remains unclear.
We used microarray to identifiy the gene expression profiles in PF patients with and without PH
 
Overall design Fresh frozen lung samples were obtained from the recipients organs of 116 PF patients undergoing lung transplantation. RNA was extracted and hybridized on Affymetrix microarrays. Pulmonary artery pressures were recorded intraoperatively with right heart catheters before starting lung transplantation. Patients were divided in different groups based on the mean pulmonary artery pressure. We compared the gene expression profiles in the group with severe PH (mPAP>40 mmHg, n=17) and in that without PH (mPAP<20 mmHg, n=22)) and obtained a gene signature, which was used for clusterying analysis. The clustering analysis based on the gene signature was then validated in an Intermediate PH group (mPAP 21-39 mmHg, n=45) and in a Validation Set (n=32).
 
Contributor(s) Mura M, De Perrot M
Citation(s) 21835902
Submission date Oct 28, 2010
Last update date Jul 26, 2018
Contact name Marco Mura
E-mail(s) mmura@uhnres.utoronto.ca
Fax 4163403602
Organization name Toronto Lung Transplant Program
Department Medicine/Surgery
Lab Latner Thoracic Surgery Research Laboratories
Street address 585 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2N2
Country Canada
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (116)
GSM613638 Pulmonary Fibrosis patient 1
GSM613639 Pulmonary Fibrosis patient 2
GSM613640 Pulmonary Fibrosis patient 3
Relations
BioProject PRJNA131965

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE24988_RAW.tar 475.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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