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Series GSE250006 Query DataSets for GSE250006
Status Public on Dec 13, 2023
Title Low sucrose availability reduces basal spikelet fertility by inducing abscisic acid and jasmonic acid synthesis in wheat
Organism Triticum aestivum
Experiment type Expression profiling by high throughput sequencing
Summary Within a spike of wheat, the central spikelets usually generate three to four fertile florets, while the basal spikelets hardly achieve this. The physiological and transcriptional mechanism behind the difference in fertility between the basal and central spikelets is unclear. This study reports a high temporal-resolution investigation of transcriptomes, number and morphology of floret primordia, and physiological traits. The W6.5–W7.5 stage was regarded as the boundary to distinguish between fertile and abortive floret primordia; those floret primordia reaching the W6.5–W7.5 stage during the differentiation phase (3–9 d after terminal spikelet stage) usually developed into fertile florets in the next, dimorphism phase (12–27 d after terminal spikelet stage), whereas the others aborted. The central spikelets had a greater number of fertile florets than the basal spikelets, which was associated with more floret primordia reaching the W6.5–W7.5 stage. Physiological and transcriptional results demonstrated that the central spikelets had a higher sucrose content and lower abscisic acid (ABA) and jasmonic acid (JA) accumulation than the basal spikelets due to down-regulation of genes involved in ABA and JA synthesis. Collectively, we propose a model in which ABA and JA accumulation is induced under limiting sucrose availability (basal spikelet) through up-regulating genes involved in ABA and JA synthesis; this leads to floret primordia in the basal spikelets being hardly able to reach their fertile potential (W6.5–W7.5 stage) during the differentiation phase and then aborting. This fertility repression module may also regulate spikelet fertility in other cereal crops and potentially provides genetic resources to improve spikelet fertility.
 
Overall design To investigate the transcriptional difference between basal and central spikelets, a dynamic transcriptome analysis was conducted at 6, 9, 12, 15, 21, and 27 DAT
 
Contributor(s) SUN W, Lu C, Wen L, Liu Y, Zhou X, Xiao X, Guo X, Wang Z, Sun Z, Zhang Z, Zhang Y
Citation(s) 38069503
Submission date Dec 12, 2023
Last update date Mar 13, 2024
Contact name SUN WAN
E-mail(s) wan.sun@udl.cat
Phone +86 18739913204
Organization name China Agricultural University
Street address o. 2 Yuanmingyuan West Road, Haidian District
City Beijing
State/province Beijing
ZIP/Postal code 100193
Country China
 
Platforms (1)
GPL25409 Illumina NovaSeq 6000 (Triticum aestivum)
Samples (34)
GSM7968966 BS_6_1
GSM7968967 BS_6_2
GSM7968968 BS_6_3
Relations
BioProject PRJNA1051594

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE250006_genes_fpkm_expression.txt.gz 23.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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