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| Status |
Public on Jun 25, 2024 |
| Title |
Nitrogen signaling factor changes gene expression and binding of transcription factors |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
39256560 |
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| Submission date |
Dec 13, 2023 |
| Last update date |
Oct 03, 2024 |
| Contact name |
Fabio Mohn |
| E-mail(s) |
fabio.mohn@fmi.ch
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| Organization name |
Friedrich Miescher Institute for Biomedical Research
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| Lab |
Buehler Lab
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| Street address |
Maulbeerstrasse 66
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| City |
Basel |
| ZIP/Postal code |
4058 |
| Country |
Switzerland |
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| Platforms (2) |
| GPL17225 |
Illumina HiSeq 2500 (Schizosaccharomyces pombe) |
| GPL28961 |
Illumina NovaSeq 6000 (Schizosaccharomyces pombe) |
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| Samples (149)
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| GSM7973757 |
ChIPseq of Atf1-FLAG, 2h with methanol, input, rep 1 |
| GSM7973758 |
ChIPseq of Atf1-FLAG, 2h with methanol, input, rep 2 |
| GSM7973759 |
ChIPseq of Atf1-FLAG, 2h with methanol, input, rep 3 |
| GSM7973760 |
ChIPseq of Atf1-FLAG, 2h with NSF, input, rep 1 |
| GSM7973761 |
ChIPseq of Atf1-FLAG, 2h with NSF, input, rep 2 |
| GSM7973762 |
ChIPseq of Atf1-FLAG, 2h with NSF, input, rep 3 |
| GSM7973763 |
ChIPseq of Atf1-FLAG, 0h, FLAG-IP, rep 1 |
| GSM7973764 |
ChIPseq of Atf1-FLAG, 0h, FLAG-IP, rep 2 |
| GSM7973765 |
ChIPseq of Atf1-FLAG, 0h, FLAG-IP, rep 3 |
| GSM7973766 |
ChIPseq of Atf1-FLAG, 2h with methanol, FLAG-IP, rep 1 |
| GSM7973767 |
ChIPseq of Atf1-FLAG, 2h with methanol, FLAG-IP, rep 2 |
| GSM7973768 |
ChIPseq of Atf1-FLAG, 2h with methanol, FLAG-IP, rep 3 |
| GSM7973769 |
ChIPseq of Atf1-FLAG, 2h with NSF, FLAG-IP, rep 1 |
| GSM7973770 |
ChIPseq of Atf1-FLAG, 2h with NSF, FLAG-IP, rep 2 |
| GSM7973771 |
ChIPseq of Atf1-FLAG, 2h with NSF, FLAG-IP, rep 3 |
| GSM7973772 |
ChIPseq of Adn2-FLAG, 0h, input, rep 1 |
| GSM7973773 |
ChIPseq of Adn2-FLAG, 0h, input, rep 2 |
| GSM7973774 |
ChIPseq of Adn2-FLAG, 0h, input, rep 3 |
| GSM7973775 |
ChIPseq of Adn2-FLAG, 2h with methanol, input, rep 1 |
| GSM7973776 |
ChIPseq of Adn2-FLAG, 2h with methanol, input, rep 2 |
| GSM7973777 |
ChIPseq of Adn2-FLAG, 2h with methanol, input, rep 3 |
| GSM7973778 |
ChIPseq of Adn2-FLAG, 2h with NSF, input, rep 1 |
| GSM7973779 |
ChIPseq of Adn2-FLAG, 2h with NSF, input, rep 2 |
| GSM7973780 |
ChIPseq of Adn2-FLAG, 2h with NSF, input, rep 3 |
| GSM7973781 |
ChIPseq of Hsr1-FLAG, 0h, input, rep 1 |
| GSM7973782 |
ChIPseq of Hsr1-FLAG, 0h, input, rep 2 |
| GSM7973783 |
ChIPseq of Hsr1-FLAG, 0h, input, rep 3 |
| GSM7973784 |
ChIPseq of Hsr1-FLAG, 2h with methanol, input, rep 1 |
| GSM7973785 |
ChIPseq of Hsr1-FLAG, 2h with methanol, input, rep 2 |
| GSM7973786 |
ChIPseq of Hsr1-FLAG, 2h with methanol, input, rep 3 |
| GSM7973787 |
ChIPseq of Hsr1-FLAG, 2h with NSF, input, rep 1 |
| GSM7973788 |
ChIPseq of Hsr1-FLAG, 2h with NSF, input, rep 2 |
| GSM7973789 |
ChIPseq of Hsr1-FLAG, 2h with NSF, input, rep 3 |
| GSM7973790 |
ChIPseq of Php3-FLAG, 0h, input, rep 1 |
| GSM7973791 |
ChIPseq of Php3-FLAG, 0h, input, rep 2 |
| GSM7973792 |
ChIPseq of Php3-FLAG, 0h, input, rep 3 |
| GSM7973793 |
ChIPseq of Php3-FLAG, 2h with methanol, input, rep 1 |
| GSM7973794 |
ChIPseq of Php3-FLAG, 2h with methanol, input, rep 2 |
| GSM7973795 |
ChIPseq of Php3-FLAG, 2h with methanol, input, rep 3 |
| GSM7973796 |
ChIPseq of Php3-FLAG, 2h with NSF, input, rep 1 |
| GSM7973797 |
ChIPseq of Php3-FLAG, 2h with NSF, input, rep 2 |
| GSM7973798 |
ChIPseq of Php3-FLAG, 2h with NSF, input, rep 3 |
| GSM7973799 |
ChIPseq of Adn2-FLAG, 0h, FLAG-IP, rep 1 |
| GSM7973800 |
ChIPseq of Adn2-FLAG, 0h, FLAG-IP, rep 2 |
| GSM7973801 |
ChIPseq of Adn2-FLAG, 0h, FLAG-IP, rep 3 |
| GSM7973802 |
ChIPseq of Adn2-FLAG, 2h with methanol, FLAG-IP, rep 1 |
| GSM7973803 |
ChIPseq of Adn2-FLAG, 2h with methanol, FLAG-IP, rep 2 |
| GSM7973804 |
ChIPseq of Adn2-FLAG, 2h with methanol, FLAG-IP, rep 3 |
| GSM7973805 |
ChIPseq of Adn2-FLAG, 2h with NSF, FLAG-IP, rep 1 |
| GSM7973806 |
ChIPseq of Adn2-FLAG, 2h with NSF, FLAG-IP, rep 2 |
| GSM7973807 |
ChIPseq of Adn2-FLAG, 2h with NSF, FLAG-IP, rep 3 |
| GSM7973808 |
ChIPseq of Hsr1-FLAG, 0h, FLAG-IP, rep 1 |
| GSM7973809 |
ChIPseq of Hsr1-FLAG, 0h, FLAG-IP, rep 2 |
| GSM7973810 |
ChIPseq of Hsr1-FLAG, 0h, FLAG-IP, rep 3 |
| GSM7973811 |
ChIPseq of Hsr1-FLAG, 2h with methanol, FLAG-IP, rep 1 |
| GSM7973812 |
ChIPseq of Hsr1-FLAG, 2h with methanol, FLAG-IP, rep 2 |
| GSM7973813 |
ChIPseq of Hsr1-FLAG, 2h with methanol, FLAG-IP, rep 3 |
| GSM7973814 |
ChIPseq of Hsr1-FLAG, 2h with NSF, FLAG-IP, rep 1 |
| GSM7973815 |
ChIPseq of Hsr1-FLAG, 2h with NSF, FLAG-IP, rep 2 |
| GSM7973816 |
ChIPseq of Hsr1-FLAG, 2h with NSF, FLAG-IP, rep 3 |
| GSM7973817 |
ChIPseq of Php3-FLAG, 0h, FLAG-IP, rep 1 |
| GSM7973818 |
ChIPseq of Php3-FLAG, 0h, FLAG-IP, rep 2 |
| GSM7973819 |
ChIPseq of Php3-FLAG, 0h, FLAG-IP, rep 3 |
| GSM7973820 |
ChIPseq of Php3-FLAG, 2h with methanol, FLAG-IP, rep 1 |
| GSM7973821 |
ChIPseq of Php3-FLAG, 2h with methanol, FLAG-IP, rep 2 |
| GSM7973822 |
ChIPseq of Php3-FLAG, 2h with methanol, FLAG-IP, rep 3 |
| GSM7973823 |
ChIPseq of Php3-FLAG, 2h with NSF, FLAG-IP, rep 1 |
| GSM7973824 |
ChIPseq of Php3-FLAG, 2h with NSF, FLAG-IP, rep 2 |
| GSM7973825 |
ChIPseq of Php3-FLAG, 2h with NSF, FLAG-IP, rep 3 |
| GSM7973826 |
ChIPseq of Fil1-FLAG, 0h, input, rep 1 |
| GSM7973827 |
ChIPseq of Fil1-FLAG, 0h, input, rep 2 |
| GSM7973828 |
ChIPseq of Fil1-FLAG, 0h, input, rep 3 |
| GSM7973829 |
ChIPseq of Fil1-FLAG, 2h with methanol, input, rep 1 |
| GSM7973830 |
ChIPseq of Fil1-FLAG, 2h with methanol, input, rep 2 |
| GSM7973831 |
ChIPseq of Fil1-FLAG, 2h with methanol, input, rep 3 |
| GSM7973832 |
ChIPseq of Fil1-FLAG, 2h with NSF, input, rep 1 |
| GSM7973833 |
ChIPseq of Fil1-FLAG, 2h with NSF, input, rep 2 |
| GSM7973834 |
ChIPseq of Fil1-FLAG, 2h with NSF, input, rep 3 |
| GSM7973835 |
ChIPseq of Reb1-FLAG, 0h, input, rep 1 |
| GSM7973836 |
ChIPseq of Reb1-FLAG, 0h, input, rep 2 |
| GSM7973837 |
ChIPseq of Reb1-FLAG, 0h, input, rep 3 |
| GSM7973838 |
ChIPseq of Reb1-FLAG, 2h with methanol, input, rep 1 |
| GSM7973839 |
ChIPseq of Reb1-FLAG, 2h with methanol, input, rep 2 |
| GSM7973840 |
ChIPseq of Reb1-FLAG, 2h with methanol, input, rep 3 |
| GSM7973841 |
ChIPseq of Reb1-FLAG, 2h with NSF, input, rep 1 |
| GSM7973842 |
ChIPseq of Reb1-FLAG, 2h with NSF, input, rep 2 |
| GSM7973843 |
ChIPseq of Reb1-FLAG, 2h with NSF, input, rep 3 |
| GSM7973844 |
ChIPseq of Fil1-FLAG, 0h, FLAG-IP, rep 1 |
| GSM7973845 |
ChIPseq of Fil1-FLAG, 0h, FLAG-IP, rep 2 |
| GSM7973846 |
ChIPseq of Fil1-FLAG, 0h, FLAG-IP, rep 3 |
| GSM7973847 |
ChIPseq of Fil1-FLAG, 2h with methanol, FLAG-IP, rep 1 |
| GSM7973848 |
ChIPseq of Fil1-FLAG, 2h with methanol, FLAG-IP, rep 2 |
| GSM7973849 |
ChIPseq of Fil1-FLAG, 2h with methanol, FLAG-IP, rep 3 |
| GSM7973850 |
ChIPseq of Fil1-FLAG, 2h with NSF, FLAG-IP, rep 1 |
| GSM7973851 |
ChIPseq of Fil1-FLAG, 2h with NSF, FLAG-IP, rep 2 |
| GSM7973852 |
ChIPseq of Fil1-FLAG, 2h with NSF, FLAG-IP, rep 3 |
| GSM7973853 |
ChIPseq of Reb1-FLAG, 0h, FLAG-IP, rep 1 |
| GSM7973854 |
ChIPseq of Reb1-FLAG, 0h, FLAG-IP, rep 2 |
| GSM7973855 |
ChIPseq of Reb1-FLAG, 0h, FLAG-IP, rep 3 |
| GSM7973856 |
ChIPseq of Reb1-FLAG, 2h with methanol, FLAG-IP, rep 1 |
| GSM7973857 |
ChIPseq of Reb1-FLAG, 2h with methanol, FLAG-IP, rep 2 |
| GSM7973858 |
ChIPseq of Reb1-FLAG, 2h with methanol, FLAG-IP, rep 3 |
| GSM7973859 |
ChIPseq of Reb1-FLAG, 2h with NSF, FLAG-IP, rep 1 |
| GSM7973860 |
ChIPseq of Reb1-FLAG, 2h with NSF, FLAG-IP, rep 2 |
| GSM7973861 |
ChIPseq of Reb1-FLAG, 2h with NSF, FLAG-IP, rep 3 |
| GSM7973862 |
RNAseq of parental strain, 0h, rep 1 |
| GSM7973863 |
RNAseq of parental strain, 0h, rep 2 |
| GSM7973864 |
RNAseq of parental strain, 0h, rep 3 |
| GSM7973865 |
RNAseq of parental strain, 2h with methanol, rep 1 |
| GSM7973866 |
RNAseq of parental strain, 2h with methanol, rep 2 |
| GSM7973867 |
RNAseq of parental strain, 2h with methanol, rep 3 |
| GSM7973868 |
RNAseq of parental strain, 2h with NSF, rep 1 |
| GSM7973869 |
RNAseq of parental strain, 2h with NSF, rep 2 |
| GSM7973870 |
RNAseq of parental strain, 2h with NSF, rep 3 |
| GSM7973871 |
RNAseq of parental strain, 4h with methanol, rep 2 |
| GSM7973872 |
RNAseq of parental strain, 4h with methanol, rep 3 |
| GSM7973873 |
RNAseq of parental strain, 4h with NSF, rep 1 |
| GSM7973874 |
RNAseq of parental strain, 4h with NSF, rep 2 |
| GSM7973875 |
RNAseq of parental strain, 4h with NSF, rep 3 |
| GSM7973876 |
RNAseq of parental strain, 6h with methanol, rep 1 |
| GSM7973877 |
RNAseq of parental strain, 6h with methanol, rep 2 |
| GSM7973878 |
RNAseq of parental strain, 6h with methanol, rep 3 |
| GSM7973879 |
RNAseq of parental strain, 6h with NSF, rep 1 |
| GSM7973880 |
RNAseq of parental strain, 6h with NSF, rep 2 |
| GSM7973881 |
RNAseq of parental strain, 6h with NSF, rep 3 |
| GSM8290470 |
RNAseq of parental strain, 0h, experiment 2, rep 1 |
| GSM8290471 |
RNAseq of parental strain, 0h, experiment 2, rep 2 |
| GSM8290472 |
RNAseq of parental strain, 0h, experiment 2, rep 3 |
| GSM8290473 |
RNAseq of parental strain, 2h with methanol, experiment 2, rep 1 |
| GSM8290474 |
RNAseq of parental strain, 2h with methanol, experiment 2, rep 2 |
| GSM8290475 |
RNAseq of parental strain, 2h with methanol, experiment 2, rep 3 |
| GSM8290476 |
RNAseq of parental strain, 2h with NSF, experiment 2, rep 1 |
| GSM8290477 |
RNAseq of parental strain, 2h with NSF, experiment 2, rep 2 |
| GSM8290478 |
RNAseq of parental strain, 2h with NSF, experiment 2, rep 3 |
| GSM8290479 |
RNAseq of parental strain, 4h with methanol, experiment 2, rep 1 |
| GSM8290480 |
RNAseq of parental strain, 4h with methanol, experiment 2, rep 2 |
| GSM8290481 |
RNAseq of parental strain, 4h with methanol, experiment 2, rep 3 |
| GSM8290482 |
RNAseq of parental strain, 4h with NSF, experiment 2, rep 1 |
| GSM8290483 |
RNAseq of parental strain, 4h with NSF, experiment 2, rep 2 |
| GSM8290484 |
RNAseq of parental strain, 4h with NSF, experiment 2, rep 3 |
| GSM8290485 |
RNAseq of parental strain, 6h with methanol, experiment 2, rep 1 |
| GSM8290486 |
RNAseq of parental strain, 6h with methanol, experiment 2, rep 2 |
| GSM8290487 |
RNAseq of parental strain, 6h with methanol, experiment 2, rep 3 |
| GSM8290488 |
RNAseq of parental strain, 6h with NSF, experiment 2, rep 1 |
| GSM8290489 |
RNAseq of parental strain, 6h with NSF, experiment 2, rep 2 |
| GSM8290490 |
RNAseq of parental strain, 6h with NSF, experiment 2, rep 3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE250092 |
Nitrogen signaling factor changes gene expression and binding of transcription factors [ChIP-seq] |
| GSE250093 |
Nitrogen signaling factor changes gene expression and binding of transcription factors [RNA-seq] |
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| Relations |
| BioProject |
PRJNA1052016 |
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