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GEO help: Mouse over screen elements for information. |
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Status |
Public on Jul 11, 2024 |
Title |
Polymerization of BTB transcription factors regulates chromatin occupancy |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation missing |
Has this study been published? Please login to update or notify GEO. |
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Submission date |
Dec 20, 2023 |
Last update date |
Jul 11, 2024 |
Contact name |
Jared Brown |
E-mail(s) |
jbrown@ds.dfci.harvard.edu
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Organization name |
Dana Farber Cancer Institute
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Department |
Data Science
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Lab |
Irizarry
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Street address |
Mailtop CLS11007, 450 Brookline Ave
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City |
Boston |
State/province |
MA |
ZIP/Postal code |
02215 |
Country |
USA |
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Platforms (2) |
GPL21697 |
NextSeq 550 (Homo sapiens) |
GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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Samples (147)
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GSM7984388 |
293T, ZBTB3-KO, DMSO 24h, rep1 |
GSM7984389 |
293T, ZBTB3-KO, DMSO 24h, rep2 |
GSM7984390 |
293T, ZBTB3-KO, DMSO 24h, rep3 |
GSM7984391 |
293T, ZBTB3-KO, 0.1 Dox 24h, rep1 |
GSM7984392 |
293T, ZBTB3-KO, 0.1 Dox 24h, rep2 |
GSM7984393 |
293T, ZBTB3-KO, 0.1 Dox 24h, rep3 |
GSM7984394 |
293T, ZBTB3-KO, DMSO 48h, rep1 |
GSM7984395 |
293T, ZBTB3-KO, DMSO 48h, rep2 |
GSM7984396 |
293T, ZBTB3-KO, DMSO 48h, rep3 |
GSM7984397 |
293T, ZBTB3-KO, 1 Dox 48h, rep1 |
GSM7984398 |
293T, ZBTB3-KO, 1 Dox 48h, rep2 |
GSM7984399 |
293T, ZBTB3-KO, 1 Dox 48h, rep3 |
GSM7984400 |
293T, ZBTB3-Overexpressed, DMSO, rep1 |
GSM7984401 |
293T, ZBTB3-Overexpressed, DMSO, rep2 |
GSM7984402 |
293T, ZBTB3-Overexpressed, DMSO, rep3 |
GSM7984403 |
293T, ZBTB3-Overexpressed, 0.01 Dox 24h, rep1 |
GSM7984404 |
293T, ZBTB3-Overexpressed, 0.01 Dox 24h, rep2 |
GSM7984405 |
293T, ZBTB3-Overexpressed, 0.01 Dox 24h, rep3 |
GSM7984406 |
293T, ZBTB3-Overexpressed, 0.1 Dox 24h, rep1 |
GSM7984407 |
293T, ZBTB3-Overexpressed, 0.1 Dox 24h, rep2 |
GSM7984408 |
293T, ZBTB3-Overexpressed, 0.1 Dox 24h, rep3 |
GSM7984409 |
293T, ZBTB3-Overexpressed, 1 Dox 24h, rep1 |
GSM7984410 |
293T, ZBTB3-Overexpressed, 1 Dox 24h, rep2 |
GSM7984411 |
293T, ZBTB3-Overexpressed, 1 Dox 24h, rep3 |
GSM7984412 |
293T, ZBTB3-Overexpressed, DMSO 48h, rep1 |
GSM7984413 |
293T, ZBTB3-Overexpressed, DMSO 48h, rep2 |
GSM7984414 |
293T, ZBTB3-Overexpressed, DMSO 48h, rep3 |
GSM7984415 |
293T, ZBTB3-Overexpressed, 1 Dox 48h, rep1 |
GSM7984416 |
293T, ZBTB3-Overexpressed, 1 Dox 48h, rep2 |
GSM7984417 |
293T, ZBTB3-Overexpressed, 1 Dox 48h, rep3 |
GSM7984418 |
293T, K116A-Overexpressed, DMSO, rep1 |
GSM7984419 |
293T, K116A-Overexpressed, DMSO, rep2 |
GSM7984420 |
293T, K116A-Overexpressed, DMSO, rep3 |
GSM7984421 |
293T, K116A-Overexpressed, 0.01 Dox 24h, rep1 |
GSM7984422 |
293T, K116A-Overexpressed, 0.01 Dox 24h, rep2 |
GSM7984423 |
293T, K116A-Overexpressed, 0.01 Dox 24h, rep3 |
GSM7984424 |
293T, K116A-Overexpressed, 0.1 Dox 24h, rep1 |
GSM7984425 |
293T, K116A-Overexpressed, 0.1 Dox 24h, rep2 |
GSM7984426 |
293T, K116A-Overexpressed, 0.1 Dox 24h, rep3 |
GSM7984427 |
293T, K116A-Overexpressed, 1 Dox 24h, rep1 |
GSM7984428 |
293T, K116A-Overexpressed, 1 Dox 24h, rep2 |
GSM7984429 |
293T, K116A-Overexpressed, 1 Dox 24h, rep3 |
GSM7984430 |
293T, K116A-Overexpressed, DMSO 48h, rep1 |
GSM7984431 |
293T, K116A-Overexpressed, DMSO 48h, rep2 |
GSM7984432 |
293T, K116A-Overexpressed, DMSO 48h, rep3 |
GSM7984433 |
293T, K116A-Overexpressed, 1 Dox 48h, rep1 |
GSM7984434 |
293T, K116A-Overexpressed, 1 Dox 48h, rep2 |
GSM7984435 |
293T, K116A-Overexpressed, 1 Dox 48h, rep3 |
GSM7984436 |
293T, ZBTB9-KO, DMSO 24h, rep1 |
GSM7984437 |
293T, ZBTB9-KO, DMSO 24h, rep2 |
GSM7984438 |
293T, ZBTB9-KO, DMSO 24h, rep3 |
GSM7984439 |
293T, ZBTB9-KO, 0.1 Dox 24h, rep1 |
GSM7984440 |
293T, ZBTB9-KO, 0.1 Dox 24h, rep2 |
GSM7984441 |
293T, ZBTB9-KO, 0.1 Dox 24h, rep3 |
GSM7984442 |
293T, ZBTB9-KO, DMSO 48h, rep1 |
GSM7984443 |
293T, ZBTB9-KO, DMSO 48h, rep2 |
GSM7984444 |
293T, ZBTB9-KO, DMSO 48h, rep3 |
GSM7984445 |
293T, ZBTB9-KO, 1 Dox 48h, rep1 |
GSM7984446 |
293T, ZBTB9-KO, 1 Dox 48h, rep2 |
GSM7984447 |
293T, ZBTB9-KO, 1 Dox 48h, rep3 |
GSM7984448 |
293T, ZBTB9-Overexpressed, DMSO, rep1 |
GSM7984449 |
293T, ZBTB9-Overexpressed, DMSO, rep2 |
GSM7984450 |
293T, ZBTB9-Overexpressed, DMSO, rep3 |
GSM7984451 |
293T, ZBTB9-Overexpressed, 0.01 Dox 24h, rep1 |
GSM7984452 |
293T, ZBTB9-Overexpressed, 0.01 Dox 24h, rep2 |
GSM7984453 |
293T, ZBTB9-Overexpressed, 0.01 Dox 24h, rep3 |
GSM7984454 |
293T, ZBTB9-Overexpressed, 0.1 Dox 24h, rep1 |
GSM7984455 |
293T, ZBTB9-Overexpressed, 0.1 Dox 24h, rep2 |
GSM7984456 |
293T, ZBTB9-Overexpressed, 0.1 Dox 24h, rep3 |
GSM7984457 |
293T, ZBTB9-Overexpressed, 1 Dox 24h, rep1 |
GSM7984458 |
293T, ZBTB9-Overexpressed, 1 Dox 24h, rep2 |
GSM7984459 |
293T, ZBTB9-Overexpressed, 1 Dox 24h, rep3 |
GSM7984460 |
293T, ZBTB9-Overexpressed, DMSO 48h, rep1 |
GSM7984461 |
293T, ZBTB9-Overexpressed, DMSO 48h, rep2 |
GSM7984462 |
293T, ZBTB9-Overexpressed, DMSO 48h, rep3 |
GSM7984463 |
293T, ZBTB9-Overexpressed, 1 Dox 48h, rep1 |
GSM7984464 |
293T, ZBTB9-Overexpressed, 1 Dox 48h, rep2 |
GSM7984465 |
293T, ZBTB9-Overexpressed, 1 Dox 48h, rep3 |
GSM7984466 |
293T, W128A-Overexpressed, DMSO 24h, rep1 |
GSM7984467 |
293T, W128A-Overexpressed, DMSO 24h, rep2 |
GSM7984468 |
293T, W128A-Overexpressed, DMSO 24h, rep3 |
GSM7984469 |
293T, W128A-Overexpressed, 0.01 Dox 24h, rep1 |
GSM7984470 |
293T, W128A-Overexpressed, 0.01 Dox 24h, rep2 |
GSM7984471 |
293T, W128A-Overexpressed, 0.01 Dox 24h, rep3 |
GSM7984472 |
293T, W128A-Overexpressed, 0.1 Dox 24h, rep1 |
GSM7984473 |
293T, W128A-Overexpressed, 0.1 Dox 24h, rep2 |
GSM7984474 |
293T, W128A-Overexpressed, 0.1 Dox 24h, rep3 |
GSM7984475 |
293T, W128A-Overexpressed, 1 Dox 24h, rep1 |
GSM7984476 |
293T, W128A-Overexpressed, 1 Dox 24h, rep2 |
GSM7984477 |
293T, W128A-Overexpressed, 1 Dox 24h, rep3 |
GSM7984478 |
293T, W128A-Overexpressed, DMSO 48h, rep1 |
GSM7984479 |
293T, W128A-Overexpressed, DMSO 48h, rep2 |
GSM7984480 |
293T, W128A-Overexpressed, DMSO 48h, rep3 |
GSM7984481 |
293T, W128A-Overexpressed, 1 Dox 48h, rep1 |
GSM7984482 |
293T, W128A-Overexpressed, 1 Dox 48h, rep2 |
GSM7984483 |
293T, W128A-Overexpressed, 1 Dox 48h, rep3 |
GSM7986007 |
293T WT-ZBTB3, Input, 0.01 Dox, rep1 |
GSM7986008 |
293T WT-ZBTB3, Input, 0.01 Dox, rep2 |
GSM7986009 |
293T WT-ZBTB3, Input, 0.1 Dox, rep1 |
GSM7986010 |
293T WT-ZBTB3, Input, 0.1 Dox, rep2 |
GSM7986011 |
293T WT-ZBTB3, Input, 1 Dox, rep1 |
GSM7986012 |
293T WT-ZBTB3, Input, 1 Dox, rep2 |
GSM7986013 |
293T K166A, Input, 0.01 Dox, rep1 |
GSM7986014 |
293T K166A, Input, 0.01 Dox, rep2 |
GSM7986015 |
293T K166A, Input, 0.1 Dox, rep1 |
GSM7986016 |
293T K166A, Input, 0.1 Dox, rep2 |
GSM7986017 |
293T K166A, Input, 1 Dox, rep1 |
GSM7986018 |
293T K166A, Input, 1 Dox, rep2 |
GSM7986019 |
293T WT-ZBTB3, ZBTB3, 0.01 Dox, rep1 |
GSM7986020 |
293T WT-ZBTB3, ZBTB3, 0.01 Dox, rep2 |
GSM7986021 |
293T WT-ZBTB3, ZBTB3, 0.1 Dox, rep1 |
GSM7986022 |
293T WT-ZBTB3, ZBTB3, 0.1 Dox, rep2 |
GSM7986023 |
293T WT-ZBTB3, ZBTB3, 1 Dox, rep1 |
GSM7986024 |
293T WT-ZBTB3, ZBTB3, 1 Dox, rep2 |
GSM7986025 |
293T K166A, ZBTB3, 0.01 Dox, rep1 |
GSM7986026 |
293T K166A, ZBTB3, 0.01 Dox, rep2 |
GSM7986027 |
293T K166A, ZBTB3, 0.1 Dox, rep1 |
GSM7986028 |
293T K166A, ZBTB3, 0.1 Dox, rep2 |
GSM7986029 |
293T K166A, ZBTB3, 1 Dox, rep1 |
GSM7986030 |
293T K166A, ZBTB3, 1 Dox, rep2 |
GSM7986031 |
293T WT-ZBTB9, Input, 0.01 Dox, rep1 |
GSM7986032 |
293T WT-ZBTB9, Input, 0.01 Dox, rep2 |
GSM7986033 |
293T WT-ZBTB9, Input, 0.1 Dox, rep1 |
GSM7986034 |
293T WT-ZBTB9, Input, 0.1 Dox, rep2 |
GSM7986035 |
293T WT-ZBTB9, Input, 1 Dox, rep1 |
GSM7986036 |
293T WT-ZBTB9, Input, 1 Dox, rep2 |
GSM7986037 |
293T W128A, Input, 0.01 Dox, rep1 |
GSM7986038 |
293T W128A, Input, 0.01 Dox, rep2 |
GSM7986039 |
293T W128A, Input, 0.1 Dox, rep1 |
GSM7986040 |
293T W128A, Input, 0.1 Dox, rep2 |
GSM7986041 |
293T W128A, Input, 1 Dox, rep1 |
GSM7986042 |
293T W128A, Input, 1 Dox, rep2 |
GSM7986043 |
293T WT-ZBTB9, ZBTB9, 0.01 Dox, rep1 |
GSM7986044 |
293T WT-ZBTB9, ZBTB9, 0.01 Dox, rep2 |
GSM7986045 |
293T WT-ZBTB9, ZBTB9, 0.1 Dox, rep1 |
GSM7986046 |
293T WT-ZBTB9, ZBTB9, 0.1 Dox, rep2 |
GSM7986047 |
293T WT-ZBTB9, ZBTB9, 1 Dox, rep1 |
GSM7986048 |
293T WT-ZBTB9, ZBTB9, 1 Dox, rep2 |
GSM7986049 |
293T W128A, ZBTB9, 0.01 Dox, rep1 |
GSM7986050 |
293T W128A, ZBTB9, 0.01 Dox, rep2 |
GSM7986051 |
293T W128A, ZBTB9, 0.1 Dox, rep1 |
GSM7986052 |
293T W128A, ZBTB9, 0.1 Dox, rep2 |
GSM7986053 |
293T W128A, ZBTB9, 1 Dox, rep1 |
GSM7986054 |
293T W128A, ZBTB9, 1 Dox, rep2 |
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This SuperSeries is composed of the following SubSeries: |
GSE251638 |
Polymerization of BTB transcription factors regulates chromatin occupancy [RNA-Seq] |
GSE251687 |
Polymerization of BTB transcription factors regulates chromatin occupancy [ChIP-Seq] |
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Relations |
BioProject |
PRJNA1055064 |
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