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| Status |
Public on Oct 07, 2024 |
| Title |
Cell and Transcriptomic Diversity of Infrapatellar Fat Pad during Knee Osteoarthritis [Spatial Transcriptomics] |
| Organism |
Homo sapiens |
| Experiment type |
Other
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| Summary |
Objective: To spatially resolve the identified celltypes, subtypes and transcriptomic profiles from single-nuclei RNA-seq with matched 12 infrapatellar fat pad of knee OA patients using spatial transcriptomics sequencing.
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| Overall design |
Spatial transcriptomics sequencing libraries were constructed for 12 infrapatellar fat pad (IFP) of knee OA samples using the 10X Genomics Visium CytAssist Spatial Gene Expression Reagent Kits to spatially resolve the celltypes in the IFP tissue using bioinformatics analysis.
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| Contributor(s) |
Peters H, Potla P, Rockel JS, Tockovska T, Pastrello C, Jurisica I, Delos Santos K, Vohra S, Fine N, Lively S, Perry K, Looby N, Han Li S, Chandran V, Hueniken K, Kaur P, Perruccio AV, Mahomed NN, Rampersaud R, Syed KA, Gracey E, Krawetz R, Buechler MB, Gandhi R, Kapoor M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jan 13, 2024 |
| Last update date |
Oct 08, 2024 |
| Contact name |
Mohit Kapoor |
| E-mail(s) |
mohit.kapoor@uhnresearch.ca
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| Organization name |
Schroeder Arthritis Institute
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| Street address |
60 Leonard Ave
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5T 0S8 |
| Country |
Canada |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE253200 |
Cell and Transcriptomic Diversity of Infrapatellar Fat Pad during Knee Osteoarthritis |
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| Relations |
| BioProject |
PRJNA1064410 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE253199_RAW.tar |
465.9 Mb |
(http)(custom) |
TAR (of CSV, JPG, JSON, MTX, PNG, TIFF, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
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