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| Status |
Public on Nov 18, 2010 |
| Title |
Dm_y[1]cn[1] bw[1] sp[1]_embryo_4-6h_TotalRNA_p200_224-226-228_7bp |
| Project |
modENCODE
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| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
modENCODE_submission_3248
This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| |
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| Overall design |
EXPERIMENT TYPE: Transcript tiling array analysis. BIOLOGICAL SOURCE: Strain: Y cn bw sp; Developmental Stage: Embryo 4-6h; Genotype: y[1] oc[R3.2]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] lab[R4.2] MstProx[1] GstD5[1] Rh6[1]; NUMBER OF REPLICATES: 3; EXPERIMENTAL FACTORS: Strain Y cn bw sp; Developmental Stage Embryo 4-6h
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| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| |
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| Contributor(s) |
Gingeras T, Zaleski C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA168994 |
| |
| Submission date |
Nov 15, 2010 |
| Last update date |
Jun 28, 2012 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
|
| Phone |
416-673-8579
|
| Organization name |
Ontario Institute for Cancer Research
|
| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
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| Platforms (5)
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| GPL7770 |
[DM_5chip_1] Affymetrix GeneChip Drosophila Tiling 7BP Array 1 |
| GPL7771 |
[DM_5chip_2] Affymetrix GeneChip Drosophila Tiling 7BP Array 2 |
| GPL7772 |
[DM_5chip_3] Affymetrix GeneChip Drosophila Tiling 7BP Array 3 |
| GPL7773 |
[DM_5chip_4] Affymetrix GeneChip Drosophila Tiling 7BP Array 4 |
| GPL7774 |
[DM_5chip_5] Affymetrix GeneChip Drosophila Tiling 7BP Array 5 |
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| Samples (15)
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| GSM624330 |
embryos,4-6 hr after egg laying (Celniker/RNA:224) extraction1_array1 |
| GSM624331 |
embryos,4-6 hr after egg laying (Celniker/RNA:224) extraction1_array2 |
| GSM624332 |
embryos,4-6 hr after egg laying (Celniker/RNA:224) extraction1_array3 |
| GSM624333 |
embryos,4-6 hr after egg laying (Celniker/RNA:224) extraction1_array4 |
| GSM624334 |
embryos,4-6 hr after egg laying (Celniker/RNA:224) extraction1_array5 |
| GSM624335 |
embryos,4-6 hr after egg laying (Celniker/RNA:226) extraction2_array1 |
| GSM624336 |
embryos,4-6 hr after egg laying (Celniker/RNA:226) extraction2_array2 |
| GSM624337 |
embryos,4-6 hr after egg laying (Celniker/RNA:226) extraction2_array3 |
| GSM624338 |
embryos,4-6 hr after egg laying (Celniker/RNA:226) extraction2_array4 |
| GSM624339 |
embryos,4-6 hr after egg laying (Celniker/RNA:226) extraction2_array5 |
| GSM624340 |
embryos,4-6 hr after egg laying (Celniker/RNA:228) extraction3_array1 |
| GSM624341 |
embryos,4-6 hr after egg laying (Celniker/RNA:228) extraction3_array2 |
| GSM624342 |
embryos,4-6 hr after egg laying (Celniker/RNA:228) extraction3_array3 |
| GSM624343 |
embryos,4-6 hr after egg laying (Celniker/RNA:228) extraction3_array4 |
| GSM624344 |
embryos,4-6 hr after egg laying (Celniker/RNA:228) extraction3_array5 |
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