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Series GSE253476 Query DataSets for GSE253476
Status Public on Apr 16, 2024
Title Fibrin promotes oxidative stress and neuronal loss in traumatic brain injury via innate immune activation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Traumatic brain injury (TBI) causes significant blood-brain barrier (BBB) breakdown, resulting in the extravasation of blood proteins into the brain. The impact of blood proteins, especially fibrinogen, on inflammation and neurodegeneration post-TBI is not fully understood, highlighting a critical gap in our comprehension of TBI pathology and its connection to innate immune activation. We combined vascular casting with 3D imaging of solvent-cleared organs (uDISCO) to study the spatial distribution of the blood coagulation protein fibrinogen in large, intact brain volumes and assessed the temporal regulation of the fibrin(ogen) deposition by immunohistochemistry in a murine model of TBI. Fibrin(ogen) deposition and innate immune cell markers were co-localized by immunohistochemistry in mouse and human brains after TBI. We assessed the role of fibrinogen in TBI using unbiased transcriptomics, flow cytometry and immunohistochemistry for innate immune and neuronal markers in Fggγ390–396A knock-in mice, which express a mutant fibrinogen that retains normal clotting function, but lacks the γ390–396 binding motif to CD11b/CD18 integrin receptor. We show that cerebral fibrinogen deposits were associated with activated innate immune cells in both human and murine TBI. Genetic elimination of fibrin-CD11b interaction reduced peripheral monocyte recruitment and the activation of inflammatory and reactive oxygen species (ROS) gene pathways in microglia and macrophages after TBI. Blockade of the fibrin-CD11b interaction was also protective from oxidative stress damage and cortical loss after TBI. These data suggest that fibrinogen is a regulator of innate immune activation and neurodegeneration in TBI. Abrogating post-injury neuroinflammation by selective blockade of fibrin’s inflammatory functions may have implications for long-term neurologic recovery following brain trauma.








 
Overall design C57BL/6 and Fggg390-396A mice underwent controlled cortical impact (CCI), a model of TBI. 24h post CCI, CD45lowCD11b+ and CD45hiCD11b+ immune cells were sorted from ipsilaterial brain regions and profiled via bulk RNA-seq. See Methods of publication for detailed experimental details.
 
Contributor(s) Mendiola AS, Akassoglou K, Ryu JK
Citation(s) 38622640
Submission date Jan 17, 2024
Last update date Apr 16, 2024
Contact name Jae Ryu
E-mail(s) jae.ryu@gladstone.ucsf.edu
Organization name Gladstone Institutes
Street address 1650 Owens st
City San Francisco, CA
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (21)
GSM8021365 Fgg_1d_Mg_R1
GSM8021366 Fgg_1d_Mg_R2
GSM8021367 Fgg_1d_Mg_R3
Relations
BioProject PRJNA1065866

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE253476_salmon.merged.gene_counts_scaled_GEO.txt.gz 2.4 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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