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Status |
Public on Nov 24, 2010 |
Title |
Individual variation in confinement response at 168h |
Organism |
Oncorhynchus mykiss |
Experiment type |
Expression profiling by array
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Summary |
Farmed fish are unavoidably exposed to husbandry-related stressors which can result in outbreaks of disease, reduced reproductive success and poor growth. Biomarkers are needed for the establishment of selective breeding approaches for the production of stress resistant fish. In this context, microarray analysis has been carried out on liver tissues of two genetic lines of rainbow trout, high responders (HR) and low responders (LR), after confinement for various time periods. Microarray hybridisations provided gene expression profiles for 10 individual fish (5 of the HR line and 5 of the LR line) after 168h of confinment stress. Keywords : stress response, individual variation, fixed time point, comparison of two lines
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Overall design |
All 10 samples were hybridised against a common reference source that contained equal amounts of all 10 samples. Each sample was hybridised twice against this reference using a dye-swap setup.
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Contributor(s) |
Cairns MT, Pottinger TG, Pemmasani K |
Citation missing |
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Submission date |
Nov 17, 2010 |
Last update date |
Mar 23, 2012 |
Contact name |
Michael Taylor Cairns |
E-mail(s) |
michael.cairns@nuigalway.ie
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Phone |
0035391492094
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Organization name |
NUI Galway
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Department |
MRI
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Lab |
Rm 104
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Street address |
University Road
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City |
Galway |
ZIP/Postal code |
n/a |
Country |
Ireland |
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Platforms (1) |
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Samples (20)
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This SubSeries is part of SuperSeries: |
GSE25584 |
Confinement stress in HR and LR trout lines |
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Relations |
BioProject |
PRJNA142619 |