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Series GSE25440 Query DataSets for GSE25440
Status Public on Nov 24, 2010
Title Individual variation in confinement response at 168h
Organism Oncorhynchus mykiss
Experiment type Expression profiling by array
Summary Farmed fish are unavoidably exposed to husbandry-related stressors which can result in outbreaks of disease, reduced reproductive success and poor growth. Biomarkers are needed for the establishment of selective breeding approaches for the production of stress resistant fish. In this context, microarray analysis has been carried out on liver tissues of two genetic lines of rainbow trout, high responders (HR) and low responders (LR), after confinement for various time periods. Microarray hybridisations provided gene expression profiles for 10 individual fish (5 of the HR line and 5 of the LR line) after 168h of confinment stress. Keywords : stress response, individual variation, fixed time point, comparison of two lines
 
Overall design All 10 samples were hybridised against a common reference source that contained equal amounts of all 10 samples. Each sample was hybridised twice against this reference using a dye-swap setup.
 
Contributor(s) Cairns MT, Pottinger TG, Pemmasani K
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 17, 2010
Last update date Mar 23, 2012
Contact name Michael Taylor Cairns
E-mail(s) michael.cairns@nuigalway.ie
Phone 0035391492094
Organization name NUI Galway
Department MRI
Lab Rm 104
Street address University Road
City Galway
ZIP/Postal code n/a
Country Ireland
 
Platforms (1)
GPL11206 Aquafirst_Trout
Samples (20)
GSM624390 HS43F
GSM624391 HS43R
GSM624392 HS44F
This SubSeries is part of SuperSeries:
GSE25584 Confinement stress in HR and LR trout lines
Relations
BioProject PRJNA142619

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25440_RAW.tar 27.0 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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