|
| Status |
Public on Nov 24, 2010 |
| Title |
Spore formation of Lentinula edodes (LongSAGE) |
| Organism |
Lentinula edodes |
| Experiment type |
Expression profiling by SAGE
|
| Summary |
Gene expression profiles before and after spore formation of Lentinula edodes (L54) grown at sawdust.
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| |
|
| Overall design |
SAGE were used to generate tags from RNA of fruit bodies of L. edodes. RNA were extracted from the fruit bodies before and after spore observed. Gene expression profiles of both stages were compared to screen out genes may relate to spore formation.
To facilitate comparison of LongSAGE and SAGE data in GEO, LongSAGE tags (15bp) were trimmed to become 10bp and uploaded in previous submission (GSM87320, GSM87321). The current submission are actual LongSAGE experimental data without any extrapolation from SAGE data.
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| |
|
| Contributor(s) |
Kwan H, Chum W |
| Citation(s) |
21281728 |
| |
| Submission date |
Nov 18, 2010 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Hoi Shan Kwan |
| E-mail(s) |
hoishankwan@cuhk.edu.hk
|
| Phone |
852-2609-6270
|
| Organization name |
The Chinese University of Hong Kong
|
| Department |
Biology
|
| Street address |
|
| City |
Shatin |
| State/province |
Hong Kong SAR |
| ZIP/Postal code |
N.T. |
| Country |
China |
| |
|
| Platforms (1) |
| GPL11229 |
SAGE:15:NlaIII:Lentinula edodes |
|
| Samples (2) |
| GSM625362 |
Lentinula edodes-mature fruit body before sporulation (LongSAGE) |
| GSM625363 |
Lentinula edodes-mature fruit body after spore formation (LongSAGE) |
|
| Relations |
| BioProject |
PRJNA134599 |
