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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 05, 2024 |
| Title |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38458188 |
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| Submission date |
Feb 02, 2024 |
| Last update date |
May 07, 2024 |
| Contact name |
Michael Green |
| E-mail(s) |
mgreen5@mdanderson.org
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| Phone |
713-745-4244
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| Organization name |
The University of Texas MD Anderson Cancer Center
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| Department |
Department of Lymphoma/Myeloma
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| Street address |
7455 Fannin Street
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| City |
Houston |
| State/province |
Texas |
| ZIP/Postal code |
77054 |
| Country |
USA |
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| Platforms (2) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (176)
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| GSM7677862 |
WT, replicate 2, 10X multiome scRNA |
| GSM7677863 |
WT, replicate 3, 10X multiome scATAC |
| GSM7677864 |
WT, replicate 3, 10X multiome scRNA |
| GSM7677865 |
WT, replicate 4, 10X multiome scATAC |
| GSM7677866 |
WT, replicate 4, 10X multiome scRNA |
| GSM7677867 |
HET, replicate 1, 10X multiome scATAC |
| GSM7677868 |
HET, replicate 1, 10X multiome scRNA |
| GSM7677869 |
HET, replicate 2, 10X multiome scATAC |
| GSM7677870 |
HET, replicate 2, 10X multiome scRNA |
| GSM7677871 |
HET, replicate 3, 10X multiome scATAC |
| GSM7677872 |
HET, replicate 3, 10X multiome scRNA |
| GSM7677873 |
HET, replicate 4, 10X multiome scATAC |
| GSM7677874 |
HET, replicate 4, 10X multiome scRNA |
| GSM8059923 |
WT, replicate 1, bulkRNA |
| GSM8059924 |
WT, replicate 2, bulkRNA |
| GSM8059925 |
WT, replicate 3, bulkRNA |
| GSM8059926 |
WT, replicate 4, bulkRNA |
| GSM8059927 |
R1192C_MUT, replicate 1, bulkRNA |
| GSM8059928 |
R1192C_MUT, replicate 2, bulkRNA |
| GSM8059929 |
R1192C_MUT, replicate 3, bulkRNA |
| GSM8059930 |
R1192C_MUT, replicate 4, bulkRNA |
| GSM8059931 |
WT, replicate 1, CB, bulkRNA |
| GSM8059932 |
WT, replicate 1, CC, bulkRNA |
| GSM8059933 |
WT, replicate 2, CB, bulkRNA |
| GSM8059934 |
WT, replicate 2, CC, bulkRNA |
| GSM8059935 |
WT, replicate 3, CB, bulkRNA |
| GSM8059936 |
WT, replicate 3, CC, bulkRNA |
| GSM8059937 |
HOMO, replicate 1, CB, bulkRNA |
| GSM8059938 |
HOMO, replicate 1, CC, bulkRNA |
| GSM8059939 |
HOMO, replicate 2, CB, bulkRNA |
| GSM8059940 |
HOMO, replicate 2, CC, bulkRNA |
| GSM8059941 |
GFP_HIGH, replicate 1, 24hr, bulkATAC |
| GSM8059942 |
GFP_HIGH, replicate 1, 48hr, bulkATAC |
| GSM8059943 |
GFP_HIGH, replicate 1, 72hr, bulkATAC |
| GSM8059944 |
GFP_HIGH, replicate 2, 24hr, bulkATAC |
| GSM8059945 |
GFP_HIGH, replicate 2, 48hr, bulkATAC |
| GSM8059946 |
GFP_HIGH, replicate 2, 72hr, bulkATAC |
| GSM8059947 |
GFP_HIGH, replicate 3, 24hr, bulkATAC |
| GSM8059948 |
GFP_HIGH, replicate 3, 48hr, bulkATAC |
| GSM8059949 |
GFP_HIGH, replicate 3, 72hr, bulkATAC |
| GSM8059950 |
GFP_LOW, replicate 1, 24hr, bulkATAC |
| GSM8059951 |
GFP_LOW, replicate 1, 48hr, bulkATAC |
| GSM8059952 |
GFP_LOW, replicate 1, 72hr, bulkATAC |
| GSM8059953 |
GFP_LOW, replicate 2, 24hr, bulkATAC |
| GSM8059954 |
GFP_LOW, replicate 2, 48hr, bulkATAC |
| GSM8059955 |
GFP_LOW, replicate 2, 72hr, bulkATAC |
| GSM8059956 |
GFP_LOW, replicate 3, 24hr, bulkATAC |
| GSM8059957 |
GFP_LOW, replicate 3, 48hr, bulkATAC |
| GSM8059958 |
GFP_LOW, replicate 3, 72hr, bulkATAC |
| GSM8059959 |
GFP_HIGH, replicate 1, 24hr, bulkRNA |
| GSM8059960 |
GFP_HIGH, replicate 1, 48hr, bulkRNA |
| GSM8059961 |
GFP_HIGH, replicate 1, 72hr, bulkRNA |
| GSM8059962 |
GFP_HIGH, replicate 2, 24hr, bulkRNA |
| GSM8059963 |
GFP_HIGH, replicate 2, 48hr, bulkRNA |
| GSM8059964 |
GFP_HIGH, replicate 2, 72hr, bulkRNA |
| GSM8059965 |
GFP_HIGH, replicate 3, 24hr, bulkRNA |
| GSM8059966 |
GFP_HIGH, replicate 3, 48hr, bulkRNA |
| GSM8059967 |
GFP_HIGH, replicate 3, 72hr, bulkRNA |
| GSM8059968 |
GFP_LOW, replicate 1, 24hr, bulkRNA |
| GSM8059969 |
GFP_LOW, replicate 1, 48hr, bulkRNA |
| GSM8059970 |
GFP_LOW, replicate 1, 72hr, bulkRNA |
| GSM8059971 |
GFP_LOW, replicate 2, 24hr, bulkRNA |
| GSM8059972 |
GFP_LOW, replicate 2, 48hr, bulkRNA |
| GSM8059973 |
GFP_LOW, replicate 2, 72hr, bulkRNA |
| GSM8059974 |
GFP_LOW, replicate 3, 24hr, bulkRNA |
| GSM8059975 |
GFP_LOW, replicate 3, 48hr, bulkRNA |
| GSM8059976 |
GFP_LOW, replicate 3, 72hr, bulkRNA |
| GSM8059977 |
WT, replicate 1, bulkRNA |
| GSM8059978 |
WT, replicate 2, bulkRNA |
| GSM8059979 |
WT, replicate 3, bulkRNA |
| GSM8059980 |
WT, replicate 4, bulkRNA |
| GSM8059981 |
R1192C_MUT, replicate 1, bulkRNA |
| GSM8059982 |
R1192C_MUT, replicate 2, bulkRNA |
| GSM8059983 |
R1192C_MUT, replicate 3, bulkRNA |
| GSM8059984 |
WT, replicate 1, CB, bulkRNA |
| GSM8059985 |
WT, replicate 1, CC, bulkRNA |
| GSM8059986 |
WT, replicate 2, CB, bulkRNA |
| GSM8059987 |
WT, replicate 2, CC, bulkRNA |
| GSM8059988 |
HET, replicate 1, CB, bulkRNA |
| GSM8059989 |
HET, replicate 1, CC, bulkRNA |
| GSM8059990 |
HET, replicate 2, CB, bulkRNA |
| GSM8059991 |
HET, replicate 2, CC, bulkRNA |
| GSM8059992 |
WT, replicate 1, bulkATAC |
| GSM8059993 |
WT, replicate 2, bulkATAC |
| GSM8059994 |
WT, replicate 3, bulkATAC |
| GSM8059995 |
WT, replicate 4, bulkATAC |
| GSM8059996 |
R1192C_MUT, replicate 1, bulkATAC |
| GSM8059997 |
R1192C_MUT, replicate 2, bulkATAC |
| GSM8059998 |
R1192C_MUT, replicate 3, bulkATAC |
| GSM8059999 |
R1192C_MUT, replicate 4, bulkATAC |
| GSM8060000 |
WT, replicate 1, CB, bulkATAC |
| GSM8060001 |
WT, replicate 1, CC, bulkATAC |
| GSM8060002 |
WT, replicate 2, CB, bulkATAC |
| GSM8060003 |
WT, replicate 2, CC, bulkATAC |
| GSM8060004 |
WT, replicate 3, CB, bulkATAC |
| GSM8060005 |
WT, replicate 3, CC, bulkATAC |
| GSM8060006 |
HOMO, replicate 1, CB, bulkATAC |
| GSM8060007 |
HOMO, replicate 1, CC, bulkATAC |
| GSM8060008 |
HOMO, replicate 2, CB, bulkATAC |
| GSM8060009 |
HOMO, replicate 2, CC, bulkATAC |
| GSM8060010 |
HOMO, replicate 3, CB, bulkATAC |
| GSM8060011 |
HOMO, replicate 3, CC, bulkATAC |
| GSM8060012 |
GFP_HIGH, replicate 1, 24hr, bulkRNA untreated |
| GSM8060013 |
GFP_HIGH, replicate 1, 24hr, bulkRNA treated |
| GSM8060014 |
GFP_HIGH, replicate 2, 24hr, bulkRNA untreated |
| GSM8060015 |
GFP_HIGH, replicate 2, 24hr, bulkRNA treated |
| GSM8060016 |
GFP_HIGH, replicate 3, 24hr, bulkRNA untreated |
| GSM8060017 |
GFP_HIGH, replicate 3, 24hr, bulkRNA treated |
| GSM8060018 |
GFP_LOW, replicate 1, 24hr, bulkRNA untreated |
| GSM8060019 |
GFP_LOW, replicate 1, 24hr, bulkRNA treated |
| GSM8060020 |
GFP_LOW, replicate 2, 24hr, bulkRNA untreated |
| GSM8060021 |
GFP_LOW, replicate 2, 24hr, bulkRNA treated |
| GSM8060022 |
GFP_LOW, replicate 3, 24hr, bulkRNA untreated |
| GSM8060023 |
GFP_LOW, replicate 3, 24hr, bulkRNA treated |
| GSM8060024 |
GFP_HIGH, replicate 1, 24hr, PU.1 |
| GSM8060025 |
GFP_HIGH, replicate 2, 24hr, PU.1 |
| GSM8060026 |
GFP_HIGH, replicate 3, 24hr, PU.1 |
| GSM8060027 |
GFP_LOW, replicate 1, 24hr, PU.1 |
| GSM8060028 |
GFP_LOW, replicate 2, 24hr, PU.1 |
| GSM8060029 |
GFP_LOW, replicate 3, 24hr, PU.1 |
| GSM8060030 |
GFP_HIGH, replicate 1, 48hr, PU.1 |
| GSM8060031 |
GFP_HIGH, replicate 2, 48hr, PU.1 |
| GSM8060032 |
GFP_HIGH, replicate 3, 48hr, PU.1 |
| GSM8060033 |
GFP_LOW, replicate 1, 48hr, PU.1 |
| GSM8060034 |
GFP_LOW, replicate 2, 48hr, PU.1 |
| GSM8060035 |
GFP_LOW, replicate 3, 48hr, PU.1 |
| GSM8060036 |
GFP_HIGH, replicate 1, 72hr, PU.1 |
| GSM8060037 |
GFP_HIGH, replicate 2, 72hr, PU.1 |
| GSM8060038 |
GFP_HIGH, replicate 3, 72hr, PU.1 |
| GSM8060039 |
GFP_LOW, replicate 1, 72hr, PU.1 |
| GSM8060040 |
GFP_LOW, replicate 2, 72hr, PU.1 |
| GSM8060041 |
GFP_LOW, replicate 3, 72hr, PU.1 |
| GSM8060042 |
GFP_HIGH, replicate 1, 24hr, IgG |
| GSM8060043 |
GFP_HIGH, replicate 2, 24hr, IgG |
| GSM8060044 |
GFP_HIGH, replicate 3, 24hr, IgG |
| GSM8060045 |
GFP_LOW, replicate 1, 24hr, IgG |
| GSM8060046 |
GFP_LOW, replicate 2, 24hr, IgG |
| GSM8060047 |
GFP_LOW, replicate 3, 24hr, IgG |
| GSM8060048 |
GFP_HIGH, replicate 1, 48hr, IgG |
| GSM8060049 |
GFP_HIGH, replicate 2, 48hr, IgG |
| GSM8060050 |
GFP_HIGH, replicate 3, 48hr, IgG |
| GSM8060051 |
GFP_LOW, replicate 1, 48hr, IgG |
| GSM8060052 |
GFP_LOW, replicate 2, 48hr, IgG |
| GSM8060053 |
GFP_LOW, replicate 3, 48hr, IgG |
| GSM8060054 |
GFP_HIGH, replicate 1, 72hr, IgG |
| GSM8060055 |
GFP_HIGH, replicate 2, 72hr, IgG |
| GSM8060056 |
GFP_HIGH, replicate 3, 72hr, IgG |
| GSM8060057 |
GFP_LOW, replicate 1, 72hr, IgG |
| GSM8060058 |
GFP_LOW, replicate 2, 72hr, IgG |
| GSM8060059 |
GFP_LOW, replicate 3, 72hr, IgG |
| GSM8060060 |
WT, replicate 1, bulkATAC |
| GSM8060061 |
WT, replicate 2, bulkATAC |
| GSM8060062 |
WT, replicate 3, bulkATAC |
| GSM8060063 |
WT, replicate 4, bulkATAC |
| GSM8060064 |
R1192C_MUT, replicate 1, bulkATAC |
| GSM8060065 |
R1192C_MUT, replicate 2, bulkATAC |
| GSM8060066 |
R1192C_MUT, replicate 3, bulkATAC |
| GSM8060067 |
WT, replicate 1, CB, bulkATAC |
| GSM8060068 |
WT, replicate 1, CC, bulkATAC |
| GSM8060069 |
WT, replicate 2, CB, bulkATAC |
| GSM8060070 |
WT, replicate 2, CC, bulkATAC |
| GSM8060071 |
WT, replicate 3, CB, bulkATAC |
| GSM8060072 |
WT, replicate 3, CC, bulkATAC |
| GSM8060073 |
WT, replicate 4, CB, bulkATAC |
| GSM8060074 |
WT, replicate 4, CC, bulkATAC |
| GSM8060075 |
HET, replicate 1, CB, bulkATAC |
| GSM8060076 |
HET, replicate 1, CC, bulkATAC |
| GSM8060077 |
HET, replicate 2, CB, bulkATAC |
| GSM8060078 |
HET, replicate 2, CC, bulkATAC |
| GSM8060079 |
HET, replicate 3, CB, bulkATAC |
| GSM8060080 |
HET, replicate 3, CC, bulkATAC |
| GSM8060081 |
HET, replicate 4, CB, bulkATAC |
| GSM8060082 |
HET, replicate 4, CC, bulkATAC |
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| This SuperSeries is composed of the following SubSeries:
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| GSE239937 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [scMultiome] |
| GSE254896 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [ca46_rna] |
| GSE254897 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [pbrm1_rna] |
| GSE254898 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [rajiAUD_atac] |
| GSE254899 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [rajiAUD_rna] |
| GSE254900 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [raji_R1192C_rna] |
| GSE254901 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [smarca4_rna] |
| GSE254902 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [ca46_atac] |
| GSE254903 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [pbrm1_atac] |
| GSE254904 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [rajiAUD_FX1_rna] |
| GSE254905 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [rajiAUD_cutrun] |
| GSE254906 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [raji_R1192C_atac] |
| GSE254907 |
Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions [smarca4_atac] |
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| Relations |
| BioProject |
PRJNA1072570 |
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