|
Status |
Public on Apr 10, 2024 |
Title |
An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm |
Organism |
Branchiostoma lanceolatum |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
|
Summary |
We performed single-cell transcriptome analysis (using MARS-seq) and accessible chromatin profiling (ATAC-seq) in Branchiostoma lanceolatum embryos (21 hours post-fertilization)
|
|
|
Overall design |
Embryos were dissociated and pooled before sorting single-cells for scRNAseq.
|
|
|
Contributor(s) |
Sebe-Pedros A, Grau-Bove X, Bertrand S, Escriva H |
Citation(s) |
38811547 |
|
Submission date |
Feb 13, 2024 |
Last update date |
Jun 12, 2024 |
Contact name |
Arnau Sebe-Pedros |
E-mail(s) |
arnau.sebe@crg.es
|
Organization name |
Centre for Genomic Regulation
|
Department |
Systems Biology
|
Lab |
Sebe-Pedros lab
|
Street address |
Dr. Aiguader 88
|
City |
Barcelona |
ZIP/Postal code |
08003 |
Country |
Spain |
|
|
Platforms (1) |
GPL29870 |
Illumina NextSeq 500 (Branchiostoma lanceolatum) |
|
Samples (6)
|
|
Relations |
BioProject |
PRJNA1076257 |