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Series GSE255742 Query DataSets for GSE255742
Status Public on Apr 10, 2024
Title An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm
Organism Branchiostoma lanceolatum
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We performed single-cell transcriptome analysis (using MARS-seq) and accessible chromatin profiling (ATAC-seq) in Branchiostoma lanceolatum embryos (21 hours post-fertilization)
 
Overall design Embryos were dissociated and pooled before sorting single-cells for scRNAseq.
 
Contributor(s) Sebe-Pedros A, Grau-Bove X, Bertrand S, Escriva H
Citation(s) 38811547
Submission date Feb 13, 2024
Last update date Jun 12, 2024
Contact name Arnau Sebe-Pedros
E-mail(s) arnau.sebe@crg.es
Organization name Centre for Genomic Regulation
Department Systems Biology
Lab Sebe-Pedros lab
Street address Dr. Aiguader 88
City Barcelona
ZIP/Postal code 08003
Country Spain
 
Platforms (1)
GPL29870 Illumina NextSeq 500 (Branchiostoma lanceolatum)
Samples (6)
GSM8078800 Amphioxus_21hpf_scRNAseq S1
GSM8078801 Amphioxus_21hpf_scRNAseq S2
GSM8078802 Amphioxus_21hpf_ATACseq rep1
Relations
BioProject PRJNA1076257

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE255742_ATAC.nucfree.bedgraph.gz 32.3 Mb (ftp)(http) BEDGRAPH
GSE255742_Amphioxus_21hpf_metacell_gene_expression.tsv.gz 12.9 Mb (ftp)(http) TSV
GSE255742_Amphioxus_21hpf_sc_UMI_counts.tsv.gz 19.3 Mb (ftp)(http) TSV
GSE255742_Amphioxus_21hpf_sc_annotations.tsv.gz 70.4 Kb (ftp)(http) TSV
GSE255742_Readme_MARSseq.xlsx 15.9 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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