NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE255791 Query DataSets for GSE255791
Status Public on Apr 04, 2024
Title Studies on the biological role of the antifungal protein PeAfpA from Penicillium expansum by transcriptomic profiling
Organism Penicillium expansum
Experiment type Expression profiling by high throughput sequencing
Summary RNA sequencing evidenced a massive transcriptomic change linked to the onset of PeAfpA production for the wild type strain, which was confirmed in the ΔafpA mutant. We identified two gene expression clusters putatively involved in PeAfpA function, which correspond to genes induced or repressed with the production of PeAfpA.
 
Overall design Comparative gene expression profiling of P. expansum CMP-1 strain and a ΔafpA disruption mutant at time points just before and after PeAfpA production is detected
 
Contributor(s) Ropero-Pérez C, Moreno-Giménez E, F Marcos J, Manzanares P, Gandia M
Citation(s) 38554901
Submission date Feb 14, 2024
Last update date Apr 04, 2024
Contact name Carolina Ropero-Pérez
E-mail(s) cropero@iata.csic.es
Organization name Instituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC)
Department Biotechnology
Street address Carrer del Catedràtic Agustín Escardino Benlloch, 7
City Paterna (Valencia)
State/province Comunidad Valenciana
ZIP/Postal code 46980
Country Spain
 
Platforms (1)
GPL34193 Illumina NextSeq 500 (Penicillium expansum)
Samples (12)
GSM8080194 PEME0055 (ΔafpA disruption mutant), 3 days growth, rep1
GSM8080195 PEME0055 (ΔafpA disruption mutant), 3 days growth, rep2
GSM8080196 PEME0055 (ΔafpA disruption mutant), 3 days growth, rep3
Relations
BioProject PRJNA1076533

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE255791_count_table_null_afpA_RNASeq.txt.gz 236.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.