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GEO help: Mouse over screen elements for information. |
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Status |
Public on Apr 04, 2024 |
Title |
Studies on the biological role of the antifungal protein PeAfpA from Penicillium expansum by transcriptomic profiling |
Organism |
Penicillium expansum |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
RNA sequencing evidenced a massive transcriptomic change linked to the onset of PeAfpA production for the wild type strain, which was confirmed in the ΔafpA mutant. We identified two gene expression clusters putatively involved in PeAfpA function, which correspond to genes induced or repressed with the production of PeAfpA.
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Overall design |
Comparative gene expression profiling of P. expansum CMP-1 strain and a ΔafpA disruption mutant at time points just before and after PeAfpA production is detected
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Contributor(s) |
Ropero-Pérez C, Moreno-Giménez E, F Marcos J, Manzanares P, Gandia M |
Citation(s) |
38554901 |
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Submission date |
Feb 14, 2024 |
Last update date |
Apr 04, 2024 |
Contact name |
Carolina Ropero-Pérez |
E-mail(s) |
cropero@iata.csic.es
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Organization name |
Instituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC)
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Department |
Biotechnology
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Street address |
Carrer del Catedràtic Agustín Escardino Benlloch, 7
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City |
Paterna (Valencia) |
State/province |
Comunidad Valenciana |
ZIP/Postal code |
46980 |
Country |
Spain |
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Platforms (1) |
GPL34193 |
Illumina NextSeq 500 (Penicillium expansum) |
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Samples (12)
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GSM8080194 |
PEME0055 (ΔafpA disruption mutant), 3 days growth, rep1 |
GSM8080195 |
PEME0055 (ΔafpA disruption mutant), 3 days growth, rep2 |
GSM8080196 |
PEME0055 (ΔafpA disruption mutant), 3 days growth, rep3 |
GSM8080197 |
PEME0055 (ΔafpA disruption mutant), 5 days growth, rep1 |
GSM8080198 |
PEME0055 (ΔafpA disruption mutant), 5 days growth, rep2 |
GSM8080199 |
PEME0055 (ΔafpA disruption mutant), 5 days growth, rep3 |
GSM8080200 |
CMP-1 3 days growth, rep1 |
GSM8080201 |
CMP-1 3 days growth, rep2 |
GSM8080202 |
CMP-1 3 days growth, rep3 |
GSM8080203 |
CMP-1 5 days growth, rep1 |
GSM8080204 |
CMP-1 5 days growth, rep2 |
GSM8080205 |
CMP-1 5 days growth, rep3 |
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Relations |
BioProject |
PRJNA1076533 |
Supplementary file |
Size |
Download |
File type/resource |
GSE255791_count_table_null_afpA_RNASeq.txt.gz |
236.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
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