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| Status |
Public on Mar 07, 2024 |
| Title |
Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function. |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| DP2 GM140938 |
DYNAMIC BOTTOM-UP DISSECTION OF CHROMATIN LOOPING AND GENE REGULATION |
MASSACHUSETTS INSTITUTE OF TECHNOLOGY |
Anders Sejr Hansen |
| R33 CA257878 |
Super-resolution microscopy for dynamic analysis of focal enhancer amplifications in cancer |
MASSACHUSETTS INSTITUTE OF TECHNOLOGY |
Anders Sejr Hansen |
| UM1 HG011536 |
Center for 3D Structure and Physics of the Genome |
UNIV OF MASSACHUSETTS MED SCHOOL |
Job Dekker |
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| |
| Submission date |
Feb 21, 2024 |
| Last update date |
Mar 08, 2024 |
| Contact name |
Domenic Narducci |
| E-mail(s) |
domenicn@mit.edu
|
| Organization name |
Massachusetts Institute of Technology
|
| Department |
Biological Engineering
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| Lab |
Anders Hansen
|
| Street address |
Building 56 Room 787B, 32 Vassar Street
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139 |
| Country |
USA |
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| Platforms (2) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (104)
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| GSM8091463 |
JM8.N4 mESC, clone A untreated, Micro-C, rep. 1 |
| GSM8091464 |
JM8.N4 mESC, clone A ∆ZFP143 3h, Micro-C, rep. 1 |
| GSM8091465 |
JM8.N4 mESC, clone A ∆CTCF 3h, Micro-C, rep. 1 |
| GSM8091466 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, Micro-C, rep. 1 |
| GSM8091467 |
JM8.N4 mESC, clone B untreated, Micro-C, rep. 1 |
| GSM8091468 |
JM8.N4 mESC, clone B ∆ZFP143 3h, Micro-C, rep. 1 |
| GSM8091469 |
JM8.N4 mESC, clone B ∆CTCF 3h, Micro-C, rep. 1 |
| GSM8091470 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, Micro-C, rep. 1 |
| GSM8091471 |
JM8.N4 mESC, clone A untreated, Micro-C, rep. 2 |
| GSM8091472 |
JM8.N4 mESC, clone A ∆ZFP143 3h, Micro-C, rep. 2 |
| GSM8091473 |
JM8.N4 mESC, clone A ∆CTCF 3h, Micro-C, rep. 2 |
| GSM8091474 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, Micro-C, rep. 2 |
| GSM8091475 |
JM8.N4 mESC, clone B untreated, Micro-C, rep. 2 |
| GSM8091476 |
JM8.N4 mESC, clone B ∆ZFP143 3h, Micro-C, rep. 2 |
| GSM8091477 |
JM8.N4 mESC, clone B ∆CTCF 3h, Micro-C, rep. 2 |
| GSM8091478 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, Micro-C, rep. 2 |
| GSM8091479 |
JM8.N4 mESC, clone D untreated, Micro-C, rep. 1 |
| GSM8091480 |
JM8.N4 mESC, clone D ∆ZFP143 3h, Micro-C, rep. 1 |
| GSM8091481 |
JM8.N4 mESC, clone D untreated, Micro-C, rep. 2 |
| GSM8091482 |
JM8.N4 mESC, clone D ∆ZFP143 3h, Micro-C, rep. 2 |
| GSM8091483 |
HEK293T, clone 30 untreated, Micro-C, rep. 1 |
| GSM8091484 |
HEK293T, clone 30 ∆ZFP143 3h, Micro-C, rep. 1 |
| GSM8091485 |
HEK293T, clone 30 untreated, Micro-C, rep. 2 |
| GSM8091486 |
HEK293T, clone 30 ∆ZFP143 3h, Micro-C, rep. 2 |
| GSM8091487 |
JM8.N4 mESC, clone A untreated, CTCF ChIP-seq, rep. 1 |
| GSM8091488 |
JM8.N4 mESC, clone A ∆ZFP143 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091489 |
JM8.N4 mESC, clone A ∆CTCF 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091490 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091491 |
JM8.N4 mESC, clone B untreated, CTCF ChIP-seq, rep. 1 |
| GSM8091492 |
JM8.N4 mESC, clone B ∆ZFP143 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091493 |
JM8.N4 mESC, clone B ∆CTCF 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091494 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091495 |
JM8.N4 mESC, clone A untreated, CTCF ChIP-seq, rep. 2 |
| GSM8091496 |
JM8.N4 mESC, clone A ∆ZFP143 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091497 |
JM8.N4 mESC, clone A ∆CTCF 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091498 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091499 |
JM8.N4 mESC, clone B untreated, CTCF ChIP-seq, rep. 2 |
| GSM8091500 |
JM8.N4 mESC, clone B ∆ZFP143 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091501 |
JM8.N4 mESC, clone B ∆CTCF 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091502 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091503 |
JM8.N4 mESC, clone D untreated, CTCF ChIP-seq, rep. 1 |
| GSM8091504 |
JM8.N4 mESC, clone D ∆ZFP143 3h, CTCF ChIP-seq, rep. 1 |
| GSM8091505 |
JM8.N4 mESC, clone D untreated, CTCF ChIP-seq, rep. 2 |
| GSM8091506 |
JM8.N4 mESC, clone D ∆ZFP143 3h, CTCF ChIP-seq, rep. 2 |
| GSM8091507 |
JM8.N4 mESC, clone A untreated, ZNF143 ChIP-seq, rep. 1 |
| GSM8091508 |
JM8.N4 mESC, clone A ∆ZFP143 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091509 |
JM8.N4 mESC, clone A ∆CTCF 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091510 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091511 |
JM8.N4 mESC, clone B untreated, ZNF143 ChIP-seq, rep. 1 |
| GSM8091512 |
JM8.N4 mESC, clone B ∆ZFP143 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091513 |
JM8.N4 mESC, clone B ∆CTCF 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091514 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091515 |
JM8.N4 mESC, clone A untreated, ZNF143 ChIP-seq, rep. 2 |
| GSM8091516 |
JM8.N4 mESC, clone A ∆ZFP143 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091517 |
JM8.N4 mESC, clone A ∆CTCF 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091518 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091519 |
JM8.N4 mESC, clone B untreated, ZNF143 ChIP-seq, rep. 2 |
| GSM8091520 |
JM8.N4 mESC, clone B ∆ZFP143 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091521 |
JM8.N4 mESC, clone B ∆CTCF 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091522 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091523 |
JM8.N4 mESC, clone D untreated, ZNF143 ChIP-seq, rep. 1 |
| GSM8091524 |
JM8.N4 mESC, clone D ∆ZFP143 3h, ZNF143 ChIP-seq, rep. 1 |
| GSM8091525 |
JM8.N4 mESC, clone D untreated, ZNF143 ChIP-seq, rep. 2 |
| GSM8091526 |
JM8.N4 mESC, clone D ∆ZFP143 3h, ZNF143 ChIP-seq, rep. 2 |
| GSM8091527 |
JM8.N4 mESC, clone A untreated, Input, rep. 1 |
| GSM8091528 |
JM8.N4 mESC, clone A ∆ZFP143 3h, Input, rep. 1 |
| GSM8091529 |
JM8.N4 mESC, clone A ∆CTCF 3h, Input, rep. 1 |
| GSM8091530 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, Input, rep. 1 |
| GSM8091531 |
JM8.N4 mESC, clone B untreated, Input, rep. 1 |
| GSM8091532 |
JM8.N4 mESC, clone B ∆ZFP143 3h, Input, rep. 1 |
| GSM8091533 |
JM8.N4 mESC, clone B ∆CTCF 3h, Input, rep. 1 |
| GSM8091534 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, Input, rep. 1 |
| GSM8091535 |
JM8.N4 mESC, clone A untreated, Input, rep. 2 |
| GSM8091536 |
JM8.N4 mESC, clone A ∆ZFP143 3h, Input, rep. 2 |
| GSM8091537 |
JM8.N4 mESC, clone A ∆CTCF 3h, Input, rep. 2 |
| GSM8091538 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, Input, rep. 2 |
| GSM8091539 |
JM8.N4 mESC, clone B untreated, Input, rep. 2 |
| GSM8091540 |
JM8.N4 mESC, clone B ∆ZFP143 3h, Input, rep. 2 |
| GSM8091541 |
JM8.N4 mESC, clone B ∆CTCF 3h, Input, rep. 2 |
| GSM8091542 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, Input, rep. 2 |
| GSM8091543 |
JM8.N4 mESC, clone D untreated, Input, rep. 1 |
| GSM8091544 |
JM8.N4 mESC, clone D ∆ZFP143 3h, Input, rep. 1 |
| GSM8091545 |
JM8.N4 mESC, clone D untreated, Input, rep. 2 |
| GSM8091546 |
JM8.N4 mESC, clone D ∆ZFP143 3h, Input, rep. 2 |
| GSM8091547 |
JM8.N4 mESC, clone A untreated, PRO-seq, rep. 1 |
| GSM8091548 |
JM8.N4 mESC, clone A ∆ZFP143 3h, PRO-seq, rep. 1 |
| GSM8091549 |
JM8.N4 mESC, clone A ∆CTCF 3h, PRO-seq, rep. 1 |
| GSM8091550 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, PRO-seq, rep. 1 |
| GSM8091551 |
JM8.N4 mESC, clone B untreated, PRO-seq, rep. 1 |
| GSM8091552 |
JM8.N4 mESC, clone B ∆ZFP143 3h, PRO-seq, rep. 1 |
| GSM8091553 |
JM8.N4 mESC, clone B ∆CTCF 3h, PRO-seq, rep. 1 |
| GSM8091554 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, PRO-seq, rep. 1 |
| GSM8091555 |
JM8.N4 mESC, clone A untreated, PRO-seq, rep. 2 |
| GSM8091556 |
JM8.N4 mESC, clone A ∆ZFP143 3h, PRO-seq, rep. 2 |
| GSM8091557 |
JM8.N4 mESC, clone A ∆CTCF 3h, PRO-seq, rep. 2 |
| GSM8091558 |
JM8.N4 mESC, clone A ∆ZFP143/∆CTCF 3h, PRO-seq, rep. 2 |
| GSM8091559 |
JM8.N4 mESC, clone B untreated, PRO-seq, rep. 2 |
| GSM8091560 |
JM8.N4 mESC, clone B ∆ZFP143 3h, PRO-seq, rep. 2 |
| GSM8091561 |
JM8.N4 mESC, clone B ∆CTCF 3h, PRO-seq, rep. 2 |
| GSM8091562 |
JM8.N4 mESC, clone B ∆ZFP143/∆CTCF 3h, PRO-seq, rep. 2 |
| GSM8091563 |
JM8.N4 mESC, clone D untreated, PRO-seq, rep. 1 |
| GSM8091564 |
JM8.N4 mESC, clone D ∆ZFP143 3h, PRO-seq, rep. 1 |
| GSM8091565 |
JM8.N4 mESC, clone D untreated, PRO-seq, rep. 2 |
| GSM8091566 |
JM8.N4 mESC, clone D ∆ZFP143 3h, PRO-seq, rep. 2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE256225 |
Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function [Micro-C] |
| GSE256226 |
Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function [ChIP-seq] |
| GSE256227 |
Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function [PRO-seq] |
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| Relations |
| BioProject |
PRJNA1078774 |
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