GEO Accession viewer

Data table
GEO Sample	GEO title	cell line	cell type	antibody	data processing step	data processing step	data processing step	data processing step	assembly	processed data files format and content	processed data files format and content
GSM1443809	PPARgamma hMADS white rep1, day 19	hMADS-3	human adipose-derived stem cells	anti-PPAR? (H-100, sc-7196; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1443810	PPARgamma hMADS brite rep1, day 19	hMADS-3	human adipose-derived stem cells	anti-PPAR? (H-100, sc-7196; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1443811	PPARgamma hMADS white rep2, day 19	hMADS-3	human adipose-derived stem cells	anti-PPAR? (H-100, sc-7196; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1443812	PPARgamma hMADS brite rep2, day 19	hMADS-3	human adipose-derived stem cells	anti-PPAR? (H-100, sc-7196; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1537677	MED1 hMADS white rep1, day 19	hMADS-3	human adipose-derived stem cells	MED1 (M-255; sc-8998; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1537678	MED1 hMADS brite rep1, day 19	hMADS-3	human adipose-derived stem cells	MED1 (M-255; sc-8998; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1537679	MED1 hMADS white rep2, day 19	hMADS-3	human adipose-derived stem cells	MED1 (M-255; sc-8998; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1537680	MED1 hMADS brite rep2, day 19	hMADS-3	human adipose-derived stem cells	MED1 (M-255; sc-8998; Santa Cruz)	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1443817	Input hMADS white rep1, day 19	hMADS-3	human adipose-derived stem cells	None	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38
GSM1443818	Input hMADS brite rep1, day 19	hMADS-3	human adipose-derived stem cells	None	PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015).	Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5.	Peaks were detected using MACS3 v3.0.0b3.	ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3.	hg38	ChIP/Input ratio tracks for merged replicates in hg38	Narrow and broad peaks for merged replicates in hg38