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| Status |
Public on Mar 21, 2024 |
| Title |
Genomic Analysis of Human Brain Metastases Treated with Stereotactic Radiosurgery Reveals Unique Signature Based on Treatment Failure. [RNA-Seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Stereotactic radiosurgery (SRS) has been shown to be efficacious for treatment of limited brain metastasis (BM), however, the effects of SRS on human brain metastases have yet to be studied. We performed genomic analysis of resected brain metastases from patients whose resected lesion was previously treated with SRS. Our analyses demonstrated for the first time that patients possess a distinct genomic signature based on type of treatment failure including local failure, leptomeningeal spread, and radio-necrosis. Examination of the center and peripheral edge of the tumors treated with SRS indicated differential DNA damage distribution and an enrichment for tumor suppressor mutations and DNA damage repair pathways along the peripheral edge. Furthermore, the two clinical modalities used to deliver SRS, LINAC and GK, demonstrated differential effects on the tumor landscape even between controlled primary sites. Our study provides, in humans, biological evidence of differential effects of SRS across BM’s.
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| Overall design |
Pre-operative SRS samples analyzed during surgical reception from the center and peripheral edges of the tumor
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| |
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| Contributor(s) |
Shireman J, Kendziorski C, Dey M |
| Citation(s) |
38623341 |
| |
| Submission date |
Feb 23, 2024 |
| Last update date |
May 01, 2024 |
| Contact name |
Jack Shireman |
| E-mail(s) |
jshireman@wisc.edu, jshireman5@gmail.com
|
| Organization name |
UW-Madison
|
| Street address |
600 Highland Ave
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53792 |
| Country |
USA |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (46)
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| This SubSeries is part of SuperSeries: |
| GSE259343 |
Genomic Analysis of Human Brain Metastases Treated with Stereotactic Radiosurgery Reveals Unique Signature Based on Treatment Failure. |
|
| Relations |
| BioProject |
PRJNA1079731 |
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