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Series GSE25654 Query DataSets for GSE25654
Status Public on Feb 15, 2011
Title modENCODE_White Lab: genome-wide ChIP data of KW3-Kr-D2 from D.yak_E0-4h on Illumina Genome Analyzer.
Project modENCODE
Organism Drosophila yakuba
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor KW3-Kr-D2 from D.yak_E0-4h generated by ChIP and analyzed on Illumina Genome Analyzer.

For data usage terms and conditions, please refer to and
Overall design A validated dataset is comprised of three biological replicates for ChIP-chip experiments and two replicates for ChIP-seq and meet the modENCODE quality standards. The control sample is the chromatin Input used for ChIP. Factors binding profiles are generated by using specific antibodies for the protein of interest.

This submission represents the ChIP-seq component of the study
Web link
Contributor(s) Negre N, Bild NA, White KP
Citation(s) 21430782
BioProject PRJNA63463
Submission date Nov 29, 2010
Last update date May 15, 2019
Contact name Kevin P. White
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
Platforms (1)
GPL11000 Illumina Genome Analyzer (Drosophila yakuba)
Samples (2)
GSM630657 D.yak_E0-4h_KW3-Kr-D2_ChIPSeq_1
GSM630658 D.yak_E0-4h_KW3-Kr-D2_INPUT_1
This SubSeries is part of SuperSeries:
GSE23537 modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25654_RAW.tar 21.1 Mb (http)(custom) TAR (of BED, BEDGRAPH)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file

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