GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE256560

Query DataSets for GSE256560

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR005SGO)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-ces-1 in L4 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR005SGO/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (4)

More...

GSM8106151	TF ChIP-seq from whole organism (ENCLB670APQ)
GSM8106152	TF ChIP-seq from whole organism (ENCLB317NQT)
GSM8106153	TF ChIP-seq from whole organism (ENCLB304ECS)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256560_ENCFF086YJZ_peaks_and_background_as_input_for_IDR_ce10.bed.gz	646.7 Kb	(ftp)(http)	BED
GSE256560_ENCFF113ZGF_optimal_IDR_thresholded_peaks_ce10.bed.gz	21.9 Kb	(ftp)(http)	BED
GSE256560_ENCFF118BEY_peaks_and_background_as_input_for_IDR_ce11.bed.gz	645.1 Kb	(ftp)(http)	BED
GSE256560_ENCFF119UXI_optimal_IDR_thresholded_peaks_ce10.bigBed	69.9 Kb	(ftp)(http)	BIGBED
GSE256560_ENCFF208MBT_optimal_IDR_thresholded_peaks_ce11.bigBed	69.3 Kb	(ftp)(http)	BIGBED
GSE256560_ENCFF243KEV_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE256560_ENCFF373KPG_optimal_IDR_thresholded_peaks_ce11.bed.gz	21.3 Kb	(ftp)(http)	BED
GSE256560_ENCFF416GZO_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE256560_ENCFF557NMP_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF569ELZ_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF657ZYM_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF677HKY_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF748HGM_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF797QRH_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_RAW.tar	248.1 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA