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Series GSE256560

Query DataSets for GSE256560

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR005SGO)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-ces-1 in L4 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR005SGO/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (4)

More...

GSM8106151	TF ChIP-seq from whole organism (ENCLB670APQ)
GSM8106152	TF ChIP-seq from whole organism (ENCLB317NQT)
GSM8106153	TF ChIP-seq from whole organism (ENCLB304ECS)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256560_ENCFF086YJZ_peaks_and_background_as_input_for_IDR_ce10.bed.gz	646.7 Kb	(ftp)(http)	BED
GSE256560_ENCFF113ZGF_optimal_IDR_thresholded_peaks_ce10.bed.gz	21.9 Kb	(ftp)(http)	BED
GSE256560_ENCFF118BEY_peaks_and_background_as_input_for_IDR_ce11.bed.gz	645.1 Kb	(ftp)(http)	BED
GSE256560_ENCFF119UXI_optimal_IDR_thresholded_peaks_ce10.bigBed	69.9 Kb	(ftp)(http)	BIGBED
GSE256560_ENCFF208MBT_optimal_IDR_thresholded_peaks_ce11.bigBed	69.3 Kb	(ftp)(http)	BIGBED
GSE256560_ENCFF243KEV_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE256560_ENCFF373KPG_optimal_IDR_thresholded_peaks_ce11.bed.gz	21.3 Kb	(ftp)(http)	BED
GSE256560_ENCFF416GZO_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE256560_ENCFF557NMP_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF569ELZ_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF657ZYM_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF677HKY_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF748HGM_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_ENCFF797QRH_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256560_RAW.tar	248.1 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA