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Series GSE257041 Query DataSets for GSE257041
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR233MSN)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing TTX-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR233MSN/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 24, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8107003 TF ChIP-seq from whole organism (ENCLB974YVK)
GSM8107004 TF ChIP-seq from whole organism (ENCLB916BMY)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257041_ENCFF043VVI_peaks_and_background_as_input_for_IDR_ce10.bed.gz 755.8 Kb (ftp)(http) BED
GSE257041_ENCFF084PPY_optimal_IDR_thresholded_peaks_ce11.bed.gz 15.2 Kb (ftp)(http) BED
GSE257041_ENCFF143GSV_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257041_ENCFF153AGH_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257041_ENCFF186RXV_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257041_ENCFF194QWL_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257041_ENCFF243SNZ_optimal_IDR_thresholded_peaks_ce10.bed.gz 15.2 Kb (ftp)(http) BED
GSE257041_ENCFF405FMR_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257041_ENCFF592MOK_optimal_IDR_thresholded_peaks_ce10.bigBed 61.5 Kb (ftp)(http) BIGBED
GSE257041_ENCFF644ZOO_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257041_ENCFF673RRP_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257041_ENCFF677ZLH_peaks_and_background_as_input_for_IDR_ce11.bed.gz 756.1 Kb (ftp)(http) BED
GSE257041_ENCFF738TXH_optimal_IDR_thresholded_peaks_ce11.bigBed 61.6 Kb (ftp)(http) BIGBED
GSE257041_ENCFF820GWV_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257041_RAW.tar 123.4 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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