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Series GSE257239 Query DataSets for GSE257239
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR182IGG)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing NHR-232-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR182IGG/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 24, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8107345 TF ChIP-seq from whole organism (ENCLB356RBG)
GSM8107346 TF ChIP-seq from whole organism (ENCLB225NYD)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257239_ENCFF030XGN_optimal_IDR_thresholded_peaks_ce11.bed.gz 13.6 Kb (ftp)(http) BED
GSE257239_ENCFF034EBI_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257239_ENCFF156ABM_optimal_IDR_thresholded_peaks_ce10.bigBed 86.7 Kb (ftp)(http) BIGBED
GSE257239_ENCFF183CZQ_optimal_IDR_thresholded_peaks_ce10.bed.gz 17.5 Kb (ftp)(http) BED
GSE257239_ENCFF270KYW_optimal_IDR_thresholded_peaks_ce11.bigBed 79.9 Kb (ftp)(http) BIGBED
GSE257239_ENCFF296LHR_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257239_ENCFF391TAY_peaks_and_background_as_input_for_IDR_ce11.bigBed 927.6 Kb (ftp)(http) BIGBED
GSE257239_ENCFF410ILQ_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257239_ENCFF730EKG_peaks_and_background_as_input_for_IDR_ce11.bed.gz 542.9 Kb (ftp)(http) BED
GSE257239_ENCFF778ZKI_peaks_and_background_as_input_for_IDR_ce10.bigBed 913.1 Kb (ftp)(http) BIGBED
GSE257239_ENCFF842KDH_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257239_ENCFF864NEM_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257239_ENCFF880YGS_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257239_ENCFF914PYG_peaks_and_background_as_input_for_IDR_ce10.bed.gz 533.3 Kb (ftp)(http) BED
GSE257239_RAW.tar 121.8 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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