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Series GSE257348

Query DataSets for GSE257348

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR345JIR)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing SOX-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR345JIR/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8107522	TF ChIP-seq from whole organism (ENCLB544OGT)
GSM8107523	TF ChIP-seq from whole organism (ENCLB255ZPB)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257348_ENCFF164CTC_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257348_ENCFF185TQQ_optimal_IDR_thresholded_peaks_ce11.bigBed	123.3 Kb	(ftp)(http)	BIGBED
GSE257348_ENCFF208FZV_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257348_ENCFF227DTN_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257348_ENCFF254AVG_optimal_IDR_thresholded_peaks_ce10.bed.gz	36.4 Kb	(ftp)(http)	BED
GSE257348_ENCFF276ZIY_peaks_and_background_as_input_for_IDR_ce11.bed.gz	762.0 Kb	(ftp)(http)	BED
GSE257348_ENCFF447IAU_read-depth_normalized_signal_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257348_ENCFF486BDO_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257348_ENCFF537PTL_optimal_IDR_thresholded_peaks_ce10.bigBed	122.8 Kb	(ftp)(http)	BIGBED
GSE257348_ENCFF575YBC_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257348_ENCFF745GEF_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257348_ENCFF847TMB_optimal_IDR_thresholded_peaks_ce11.bed.gz	36.7 Kb	(ftp)(http)	BED
GSE257348_ENCFF939RAZ_peaks_and_background_as_input_for_IDR_ce10.bed.gz	761.9 Kb	(ftp)(http)	BED
GSE257348_ENCFF995UMQ_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257348_RAW.tar	123.8 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA