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Series GSE257422 Query DataSets for GSE257422
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR356MVJ)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq on transgenic worms expressing mdt-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR356MVJ/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Oct 24, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL26672 Illumina NovaSeq 6000 (Caenorhabditis elegans)
Samples (2)
GSM8107653 TF ChIP-seq from whole organism (ENCLB133WVG)
GSM8107654 TF ChIP-seq from whole organism (ENCLB665DPR)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257422_ENCFF119XNJ_IDR_ranked_peaks_ce11.bed.gz 4.4 Mb (ftp)(http) BED
GSE257422_ENCFF128FQA_IDR_ranked_peaks_ce11.bed.gz 4.4 Mb (ftp)(http) BED
GSE257422_ENCFF210CPF_signal_p-value_ce11.bigWig 242.0 Mb (ftp)(http) BIGWIG
GSE257422_ENCFF235MXZ_IDR_thresholded_peaks_ce11.bed.gz 31.4 Kb (ftp)(http) BED
GSE257422_ENCFF529JVB_fold_change_over_control_ce11.bigWig 308.5 Mb (ftp)(http) BIGWIG
GSE257422_ENCFF567CSP_conservative_IDR_thresholded_peaks_ce11.bed.gz 31.2 Kb (ftp)(http) BED
GSE257422_ENCFF575HAV_conservative_IDR_thresholded_peaks_ce11.bigBed 106.6 Kb (ftp)(http) BIGBED
GSE257422_ENCFF866YEX_IDR_thresholded_peaks_ce11.bigBed 106.8 Kb (ftp)(http) BIGBED
GSE257422_RAW.tar 913.3 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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