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Series GSE257600 Query DataSets for GSE257600
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR541RUY)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing F10E7.11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR541RUY/
 
Citation(s)
  • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 2012 Sep 6;489(7414):57-74. PMID: 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL22765 Illumina HiSeq 4000 (Caenorhabditis elegans)
Samples (2)
GSM8108234 TF ChIP-seq from whole organism (ENCLB929ZCP)
GSM8108235 TF ChIP-seq from whole organism (ENCLB602GAK)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257600_ENCFF124WGI_optimal_IDR_thresholded_peaks_ce10.bigBed 71.6 Kb (ftp)(http) BIGBED
GSE257600_ENCFF124YBY_optimal_IDR_thresholded_peaks_ce11.bigBed 68.7 Kb (ftp)(http) BIGBED
GSE257600_ENCFF209MKK_optimal_IDR_thresholded_peaks_ce11.bed.gz 13.5 Kb (ftp)(http) BED
GSE257600_ENCFF322GSA_peaks_and_background_as_input_for_IDR_ce11.bed.gz 473.1 Kb (ftp)(http) BED
GSE257600_ENCFF345BLA_peaks_and_background_as_input_for_IDR_ce10.bed.gz 482.8 Kb (ftp)(http) BED
GSE257600_ENCFF411WZI_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257600_ENCFF704ISG_control_normalized_signal_ce11.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSE257600_ENCFF748XSP_optimal_IDR_thresholded_peaks_ce10.bed.gz 15.5 Kb (ftp)(http) BED
GSE257600_ENCFF821FOZ_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257600_ENCFF874XEH_peaks_and_background_as_input_for_IDR_ce10.bigBed 836.9 Kb (ftp)(http) BIGBED
GSE257600_ENCFF897PDH_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257600_ENCFF921JED_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257600_ENCFF922XET_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257600_ENCFF964NNQ_peaks_and_background_as_input_for_IDR_ce11.bigBed 823.3 Kb (ftp)(http) BIGBED
GSE257600_RAW.tar 121.4 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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