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Series GSE257799 Query DataSets for GSE257799
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR387HSD)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing F13C5.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR387HSD/
 
Citation(s)
  • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 2012 Sep 6;489(7414):57-74. PMID: 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Oct 24, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (2)
GPL13657 Illumina HiSeq 2000 (Caenorhabditis elegans)
GPL22765 Illumina HiSeq 4000 (Caenorhabditis elegans)
Samples (2)
GSM8108582 TF ChIP-seq from whole organism (ENCLB966LVE)
GSM8108583 TF ChIP-seq from whole organism (ENCLB422UJG)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257799_ENCFF072XKZ_optimal_IDR_thresholded_peaks_ce11.bigBed 106.9 Kb (ftp)(http) BIGBED
GSE257799_ENCFF217MGQ_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257799_ENCFF249RLR_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257799_ENCFF283FUV_optimal_IDR_thresholded_peaks_ce10.bed.gz 37.7 Kb (ftp)(http) BED
GSE257799_ENCFF350EFB_optimal_IDR_thresholded_peaks_ce10.bigBed 108.7 Kb (ftp)(http) BIGBED
GSE257799_ENCFF352EIC_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257799_ENCFF414EWK_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257799_ENCFF592KHG_peaks_and_background_as_input_for_IDR_ce10.bed.gz 759.0 Kb (ftp)(http) BED
GSE257799_ENCFF692PYI_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257799_ENCFF805MIA_peaks_and_background_as_input_for_IDR_ce11.bed.gz 759.0 Kb (ftp)(http) BED
GSE257799_ENCFF806KUW_optimal_IDR_thresholded_peaks_ce11.bed.gz 36.5 Kb (ftp)(http) BED
GSE257799_ENCFF893NAX_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257799_ENCFF914YPA_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257799_ENCFF920KON_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257799_RAW.tar 123.7 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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