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Series GSE257838 Query DataSets for GSE257838
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR697DHN)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq on transgenic worms expressing Y56A3A.18-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR697DHN/
 
Citation(s)
  • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 2012 Sep 6;489(7414):57-74. PMID: 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL26672 Illumina NovaSeq 6000 (Caenorhabditis elegans)
Samples (2)
GSM8108664 TF ChIP-seq from whole organism (ENCLB483OTM)
GSM8108665 TF ChIP-seq from whole organism (ENCLB677TZO)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257838_ENCFF005XWB_IDR_thresholded_peaks_ce11.bigBed 109.5 Kb (ftp)(http) BIGBED
GSE257838_ENCFF090OKN_conservative_IDR_thresholded_peaks_ce11.bigBed 105.9 Kb (ftp)(http) BIGBED
GSE257838_ENCFF158EOB_conservative_IDR_thresholded_peaks_ce11.bed.gz 30.7 Kb (ftp)(http) BED
GSE257838_ENCFF411LZM_signal_p-value_ce11.bigWig 208.2 Mb (ftp)(http) BIGWIG
GSE257838_ENCFF762BYT_IDR_ranked_peaks_ce11.bed.gz 4.2 Mb (ftp)(http) BED
GSE257838_ENCFF821QVO_fold_change_over_control_ce11.bigWig 228.6 Mb (ftp)(http) BIGWIG
GSE257838_ENCFF939PWS_IDR_ranked_peaks_ce11.bed.gz 4.2 Mb (ftp)(http) BED
GSE257838_ENCFF995RYQ_IDR_thresholded_peaks_ce11.bed.gz 33.2 Kb (ftp)(http) BED
GSE257838_RAW.tar 670.1 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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