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Series GSE258192 Query DataSets for GSE258192
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR729RHJ)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq on transgenic worms expressing gei-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR729RHJ/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL22765 Illumina HiSeq 4000 (Caenorhabditis elegans)
Samples (2)
GSM8109349 TF ChIP-seq from whole organism (ENCLB972IJF)
GSM8109350 TF ChIP-seq from whole organism (ENCLB472YIZ)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258192_ENCFF080JVQ_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258192_ENCFF207DVD_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258192_ENCFF377QSO_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258192_ENCFF397OVB_optimal_IDR_thresholded_peaks_ce11.bed.gz 22.9 Kb (ftp)(http) BED
GSE258192_ENCFF505PVW_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258192_ENCFF574OHJ_optimal_IDR_thresholded_peaks_ce11.bigBed 83.0 Kb (ftp)(http) BIGBED
GSE258192_ENCFF591HKH_peaks_and_background_as_input_for_IDR_ce11.bed.gz 767.8 Kb (ftp)(http) BED
GSE258192_RAW.tar 61.8 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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