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Series GSE258406 Query DataSets for GSE258406
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR757OPC)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing VAB-15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR757OPC/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL22765 Illumina HiSeq 4000 (Caenorhabditis elegans)
Samples (2)
GSM8109719 TF ChIP-seq from whole organism (ENCLB350ABJ)
GSM8109720 TF ChIP-seq from whole organism (ENCLB028PZX)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258406_ENCFF052HDS_peaks_and_background_as_input_for_IDR_ce10.bed.gz 767.2 Kb (ftp)(http) BED
GSE258406_ENCFF085CJT_optimal_IDR_thresholded_peaks_ce11.bed.gz 22.4 Kb (ftp)(http) BED
GSE258406_ENCFF216NHW_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258406_ENCFF285IZV_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258406_ENCFF371XKX_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258406_ENCFF518JIS_optimal_IDR_thresholded_peaks_ce10.bigBed 85.3 Kb (ftp)(http) BIGBED
GSE258406_ENCFF574UDQ_control_normalized_signal_ce10.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSE258406_ENCFF602ZRU_optimal_IDR_thresholded_peaks_ce10.bed.gz 23.0 Kb (ftp)(http) BED
GSE258406_ENCFF628XNQ_optimal_IDR_thresholded_peaks_ce11.bigBed 84.6 Kb (ftp)(http) BIGBED
GSE258406_ENCFF754KNN_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258406_ENCFF795MNY_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258406_ENCFF920FWT_peaks_and_background_as_input_for_IDR_ce11.bed.gz 767.1 Kb (ftp)(http) BED
GSE258406_ENCFF962VLD_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258406_ENCFF969MUR_control_normalized_signal_ce11.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSE258406_RAW.tar 123.8 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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