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Series GSE258500

Query DataSets for GSE258500

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR943FFC)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing ZTF-18-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR943FFC/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8109879	TF ChIP-seq from whole organism (ENCLB518FMV)
GSM8109880	TF ChIP-seq from whole organism (ENCLB177VNO)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258500_ENCFF053NDC_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258500_ENCFF168JYO_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258500_ENCFF333PTQ_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258500_ENCFF394SEY_optimal_IDR_thresholded_peaks_ce11.bigBed	144.9 Kb	(ftp)(http)	BIGBED
GSE258500_ENCFF444CCL_peaks_and_background_as_input_for_IDR_ce10.bed.gz	756.2 Kb	(ftp)(http)	BED
GSE258500_ENCFF506CXN_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE258500_ENCFF549YFQ_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258500_ENCFF606EQF_optimal_IDR_thresholded_peaks_ce10.bed.gz	47.3 Kb	(ftp)(http)	BED
GSE258500_ENCFF616WPK_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE258500_ENCFF653FGM_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258500_ENCFF700THG_optimal_IDR_thresholded_peaks_ce10.bigBed	144.5 Kb	(ftp)(http)	BIGBED
GSE258500_ENCFF843JYE_peaks_and_background_as_input_for_IDR_ce11.bed.gz	756.1 Kb	(ftp)(http)	BED
GSE258500_ENCFF868SLA_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258500_ENCFF983GOH_optimal_IDR_thresholded_peaks_ce11.bed.gz	47.4 Kb	(ftp)(http)	BED
GSE258500_RAW.tar	123.1 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA