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Series GSE259193

Query DataSets for GSE259193

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR529XPL)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic worms expressing saeg-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR529XPL/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 26, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL26672

Illumina NovaSeq 6000 (Caenorhabditis elegans)

Samples (2)

GSM8111264	TF ChIP-seq from whole organism (ENCLB255NGH)
GSM8111265	TF ChIP-seq from whole organism (ENCLB403BPY)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE259193_ENCFF334AKS_conservative_IDR_thresholded_peaks_ce11.bed.gz	21.1 Kb	(ftp)(http)	BED
GSE259193_ENCFF493ZAP_IDR_ranked_peaks_ce11.bed.gz	3.8 Mb	(ftp)(http)	BED
GSE259193_ENCFF509GVR_IDR_thresholded_peaks_ce11.bigBed	81.2 Kb	(ftp)(http)	BIGBED
GSE259193_ENCFF608DVW_signal_p-value_ce11.bigWig	255.1 Mb	(ftp)(http)	BIGWIG
GSE259193_ENCFF616BDG_IDR_ranked_peaks_ce11.bed.gz	5.0 Mb	(ftp)(http)	BED
GSE259193_ENCFF658RQN_fold_change_over_control_ce11.bigWig	283.1 Mb	(ftp)(http)	BIGWIG
GSE259193_ENCFF712BLZ_conservative_IDR_thresholded_peaks_ce11.bigBed	77.5 Kb	(ftp)(http)	BIGBED
GSE259193_ENCFF758XWE_IDR_thresholded_peaks_ce11.bed.gz	24.0 Kb	(ftp)(http)	BED
GSE259193_RAW.tar	859.0 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA