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Series GSE259206

Query DataSets for GSE259206

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR533CXT)

Project

modENCODE

Organism

Drosophila melanogaster

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic flies expressing BEAF-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR533CXT/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 26, 2024

Last update date

Oct 24, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL21306

Illumina HiSeq 4000 (Drosophila melanogaster)

Samples (3)

GSM8111290	TF ChIP-seq from whole organism (ENCLB818ZAJ)
GSM8111291	TF ChIP-seq from whole organism (ENCLB245ZMY)
GSM8111292	TF ChIP-seq from whole organism (ENCLB160ITG)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE259206_ENCFF035BPY_read-depth_normalized_signal_dm6.bigWig	16.9 Mb	(ftp)(http)	BIGWIG
GSE259206_ENCFF047ECZ_control_normalized_signal_dm3.bigWig	15.3 Mb	(ftp)(http)	BIGWIG
GSE259206_ENCFF111KAD_peaks_and_background_as_input_for_IDR_dm6.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE259206_ENCFF117KBC_control_normalized_signal_dm6.bigWig	13.2 Mb	(ftp)(http)	BIGWIG
GSE259206_ENCFF160XXG_optimal_IDR_thresholded_peaks_dm3.bed.gz	120.3 Kb	(ftp)(http)	BED
GSE259206_ENCFF180JML_peaks_and_background_as_input_for_IDR_dm3.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE259206_ENCFF242KBA_read-depth_normalized_signal_dm3.bigWig	14.7 Mb	(ftp)(http)	BIGWIG
GSE259206_ENCFF278NNW_signal_of_unique_reads_dm3.bigWig	14.7 Mb	(ftp)(http)	BIGWIG
GSE259206_ENCFF597IRH_optimal_IDR_thresholded_peaks_dm3.bigBed	254.6 Kb	(ftp)(http)	BIGBED
GSE259206_ENCFF624PPD_peaks_and_background_as_input_for_IDR_dm3.bed.gz	725.5 Kb	(ftp)(http)	BED
GSE259206_ENCFF704WGH_optimal_IDR_thresholded_peaks_dm6.bed.gz	121.4 Kb	(ftp)(http)	BED
GSE259206_ENCFF855MHE_signal_of_unique_reads_dm6.bigWig	16.9 Mb	(ftp)(http)	BIGWIG
GSE259206_ENCFF908BGC_peaks_and_background_as_input_for_IDR_dm6.bed.gz	728.4 Kb	(ftp)(http)	BED
GSE259206_ENCFF966AJL_optimal_IDR_thresholded_peaks_dm6.bigBed	255.8 Kb	(ftp)(http)	BIGBED
GSE259206_RAW.tar	282.7 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA