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Series GSE259208

Query DataSets for GSE259208

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR534TFA)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing CEH-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR534TFA/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 26, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8111295	TF ChIP-seq from whole organism (ENCLB439HNV)
GSM8111296	TF ChIP-seq from whole organism (ENCLB666JPW)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE259208_ENCFF077DIG_peaks_and_background_as_input_for_IDR_ce10.bed.gz	417.5 Kb	(ftp)(http)	BED
GSE259208_ENCFF088ZVK_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE259208_ENCFF173JIX_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE259208_ENCFF248BWR_optimal_IDR_thresholded_peaks_ce10.bigBed	121.8 Kb	(ftp)(http)	BIGBED
GSE259208_ENCFF366QGR_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE259208_ENCFF375UXT_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE259208_ENCFF446VNM_read-depth_normalized_signal_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE259208_ENCFF492SSA_peaks_and_background_as_input_for_IDR_ce11.bigBed	741.7 Kb	(ftp)(http)	BIGBED
GSE259208_ENCFF653DSM_optimal_IDR_thresholded_peaks_ce10.bed.gz	36.1 Kb	(ftp)(http)	BED
GSE259208_ENCFF656FHL_peaks_and_background_as_input_for_IDR_ce11.bed.gz	415.1 Kb	(ftp)(http)	BED
GSE259208_ENCFF677ULZ_optimal_IDR_thresholded_peaks_ce11.bed.gz	36.4 Kb	(ftp)(http)	BED
GSE259208_ENCFF715RCJ_peaks_and_background_as_input_for_IDR_ce10.bigBed	746.3 Kb	(ftp)(http)	BIGBED
GSE259208_ENCFF736OZW_optimal_IDR_thresholded_peaks_ce11.bigBed	122.4 Kb	(ftp)(http)	BIGBED
GSE259208_ENCFF985VPS_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE259208_RAW.tar	120.5 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA