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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 20, 2024 |
| Title |
Glycolysis in hepatic stellate cells coordinates fibrogenic extracellular vesicle release in a spatial manner to amplify liver fibrosis |
| Organism |
Mus musculus |
| Experiment type |
Other
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| Summary |
Liver fibrosis is characterized by the activation of hepatic stellate cells (HSCs) and the release of fibrogenic nano-sized extracellular vesicles (EVs). Activated HSCs increase their glucose metabolism via glycolysis to satisfy high energy demands. Nevertheless, the mechanism of how glycolysis in HSCs coordinates fibrosis amplification in the fibrogenic zones in the liver is elusive and is the scope of this study. Single cell RNA sequencing (scRNAseq) and bulk RNAseq demonstrated that several glycolysis enzymes, including hexokinase 2 (HK2), were upregulated in activated HSCs. HSC-selective glycolysis-deficient mice (HK2ΔHSC) showed abrogated CCl4-mediated fibrosis as compared to littermate controls (HK2fl/fl). Spatial transcriptomics revealed an upregulation of several EV-related pathways in the fibrotic pericentral zone during liver fibrosis in control HK2fl/fl mice. However, glycolysis-deficient HK2ΔHSC mice showed downregulation of these EV-related pathways in the pericentral zone. Consistently, induction of glycolysis in HSCs in vitro, either by glucose or platelet-derived growth factor B (PDGF), upregulated the expression of several extracellular vesicle (EV)-related genes, including RAB31. Glycolysis in HSCs epigenetically enhanced RAB31 expression through histone-3 lysine-9 acetylation (H3K9ac) on the promoter region, leading to increased EV release. Functionally, glycolysis-dependent EVs were enriched with fibrogenic molecules and increased the expression of fibrotic markers in recipient HSCs. Finally, EVs derived from glycolysis-deficient HK2ΔHSC mice abrogated liver fibrosis amplification as compared to EVs derived from littermate control HK2fl/fl mice. In summary, glycolysis in HSCs amplifies liver fibrosis by promoting fibrogenic EV release in the pericentral fibrotic regions in the liver.
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| Overall design |
Four mouse liver samples from healthy, fibrotic, and fibrotic with intervention group were analyzed for spatial transcriptomics using Visium platform.
We crossed HK2fl/fl with PDGFRBcreERT2 (The Jackson Laboratory B6.Cg-Tg(Pdgfrb-cre/ERT2)6096Rha/J) mice to obtain PDGFRBcreERT2/Hk2fl/fl mice and HK2fl/fl littermate controls. The genotype of mice S1, S2, and S4 is HK2fl/fl, the genotype of mouse S3 is PDGFRBcreERT2/Hk2fl/fl. All mice were administered with tamoxifen (75 mg/kg for 5 consecutive days). Mouse S1 was treated with olive oil while mice S2, S3, and S4 were treated with CCl4 twice a week for 6 weeks.
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| Contributor(s) |
Kostallari E, Liu Y, Khanal S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 27, 2024 |
| Last update date |
Mar 20, 2024 |
| Contact name |
Yuanhang Liu |
| Organization name |
Mayo Clinic
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| Street address |
200 1ST ST SW
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| City |
Rochester |
| State/province |
MN |
| ZIP/Postal code |
55905 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA1081368 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE259363_RAW.tar |
222.5 Mb |
(http)(custom) |
TAR (of CSV, JPG, JSON, MTX, PNG, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
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