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Series GSE259369 Query DataSets for GSE259369
Status Public on Mar 04, 2024
Title Effects of PCB 52 Exposure Via Sub-Acute Nose-Only Inhalation on Gene Expression in Fat Depots of Adolescent Rats
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Polychlorinated biphenyls (PCBs) are persistent environmental toxicants that pose a variety of health risks in humans. PCB 52 has been found in the indoor air of schools where adolescent students and staff are being actively exposed. This study examined the three different fat depots, namely, brown adipose tissue (BAT), subcutaneous adipose tissue (SAT), and visceral adipose tissue (VAT), of adolescent Sprague-Dawley rats after sub-acute exposure to PCB 52 via nose-only inhalation. Rats were exposed for 4 hours daily for 28 consecutive days. RNA extracted from both male and female fat depots were submitted for RNA sequencing to compare the effects of PCB 52 on the expression of genes in the fat depots.
 
Overall design To determine the gene expression alterations following PCB 52 inhalation exposure in adolescent rats, samples from male and female fat depots (BAT, SAT, and VAT) were processed for RNA sequencing. (N = 6 per sex; Samples were excluded if RNA RINs were below 8).
 
Contributor(s) Gourronc FA, Bullert A, Wang H, Helm-Kwasny BK, Chimenti M, Adamcakova-Dodd A, Jing X, Ankrum JA, Thorne PS, Lehmler H, Klingelhutz AJ
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NIH grant(s)
Grant ID Grant title Affiliation Name
P42 ES013661 Airborne PCBs: Sources, Exposures, Toxicities, Remediation THE UNIVERSITY OF IOWA Keri C Hornbuckle
P30 ES005605 Environmental Health Sciences Research Center THE UNIVERSITY OF IOWA Peter S Thorne
Submission date Feb 27, 2024
Last update date Mar 04, 2024
Contact name Aloysius John Klingelhutz
E-mail(s) al-klingelhutz@uiowa.edu
Organization name University of Iowa
Department Microbiology and Immunology
Lab Klingelhutz Lab
Street address 3-612 BSB, 51 Newton Road
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platforms (1)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (70)
GSM8114863 BAT_2
GSM8114864 BAT_4
GSM8114865 BAT_6
Relations
BioProject PRJNA1081373

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE259369_Female_BAT_counts.csv.gz 263.4 Kb (ftp)(http) CSV
GSE259369_Female_SAT_counts.csv.gz 268.1 Kb (ftp)(http) CSV
GSE259369_Female_VAT_counts.csv.gz 280.1 Kb (ftp)(http) CSV
GSE259369_Male_BAT_counts.csv.gz 265.4 Kb (ftp)(http) CSV
GSE259369_Male_SAT_counts.csv.gz 283.0 Kb (ftp)(http) CSV
GSE259369_Male_VAT_counts.csv.gz 263.0 Kb (ftp)(http) CSV
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Raw data are available in SRA

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