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Series GSE262190 Query DataSets for GSE262190
Status Public on Apr 25, 2024
Title Coordinated regulation of osmotic imbalance by c-di-AMP shapes ß-lactam tolerance in Group B Streptococcus
Organisms Streptococcus agalactiae; Streptococcus agalactiae NEM316
Experiment type Expression profiling by high throughput sequencing
Summary Streptococcus agalactiae is among the few pathogens that have not developed resistance to ß-lactam antibiotics despite decades of clinical use. The molecular basis of this long-lasting susceptibility has not been investigated, and it is uncertain whether specific mechanisms constraint the emergence of resistance. In this study, we first report a conserved role of the signaling nucleotide cyclic-di-AMP in the sensitivity of S. agalactiae to ß-lactam. Specifically, we demonstrate that inactivation of the phosphodiesterase GdpP confers ß-lactam tolerance. Characterizing the signaling pathway revealed an antagonistic regulation by the transcriptional factor BusR, which is activated by c-di-AMP and negatively regulates ß-lactam susceptibility. Furthermore, we show that simultaneous inhibition of osmolyte transporters activity and transcription by c-di-AMP has an additive effect, sustaining ß-lactam tolerance. Finally, transposon mutagenesis for ß-lactam reduced susceptibility reveals a convergent pattern of mutations, including in the KhpAB small RNA chaperone and the protein S immunomodulator. Overall, our findings suggest mechanisms that may foster antibiotic resistance in S. agalactiae and demonstrate that c-di-AMP acts as a turgor pressure rheostat, coordinating an integrated response to cell wall weakening due to ß-lactam activity.
 
Overall design To investigate the c-di-AMP signaling pathway in Group B Streptococcus, we generated deletion mutants for the c-di-AMP phosphodiesterase GdpP (∆gdpP) and for the c-di-AMP regulated transcriptional repressor BusR (∆busR)
For comparative transcritomic analysis, ∆gdpP and ∆busR mutants were generated in two wild-type strains: NEM316 (capsular serotype III, CC-23) and BM110 (capsular serotype III, CC-17)
RNA are purified from exponentialy growing cultures (OD600 = 0.5) in rich media (THY) incubated at 37°C in static condition. Biological triplicate (Replicate 1, 2, and 3) are done on different days.
 
Contributor(s) Brissac T, Sismeiro O, Jacquemet E, Legendre R, Firon A
Citation(s) 38993744
Submission date Mar 21, 2024
Last update date Aug 08, 2024
Contact name Rachel Legendre
E-mail(s) rachel.legendre@pasteur.fr
Organization name Institut Pasteur
Department Research and Resource Center for Scientific Informatics
Lab Hub of Bioinformatics and Biostatistics
Street address 28, rue du docteur Roux
City Paris
ZIP/Postal code 75724
Country France
 
Platforms (2)
GPL29157 Illumina NextSeq 500 (Streptococcus agalactiae)
GPL34325 Illumina NextSeq 500 (Streptococcus agalactiae NEM316)
Samples (18)
GSM8159282 BM110 ∆busR Replicate 1
GSM8159283 BM110 ∆busR Replicate 2
GSM8159284 BM110 ∆busR Replicate 3
Relations
BioProject PRJNA1090533

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE262190_BM110.complete.txt.gz 202.6 Kb (ftp)(http) TXT
GSE262190_NEM316.complete.txt.gz 202.1 Kb (ftp)(http) TXT
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