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| Status |
Public on Apr 05, 2024 |
| Title |
Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38816618 |
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| Submission date |
Mar 29, 2024 |
| Last update date |
May 31, 2024 |
| Contact name |
Tian Mi |
| E-mail(s) |
tmi@stjude.org
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| Organization name |
St. Jude Children's Research Hospital
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| Department |
Immunology
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| Street address |
262 Danny Thomas Pl MS351
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| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (46)
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| GSM8179783 |
LN_C6M9, replicate 2, scRNAseq |
| GSM8180280 |
Naive, replicate 1, ATAC |
| GSM8180281 |
Naive, replicate 2, ATAC |
| GSM8180282 |
M9_LN, replicate 1, ATAC |
| GSM8180283 |
C6M9_LN, replicate 1, ATAC |
| GSM8180284 |
M9_TU_Tpex, replicate 1, ATAC |
| GSM8180285 |
M9_LN, replicate 2, ATAC |
| GSM8180286 |
M9_TU_Tpex, replicate 2, ATAC |
| GSM8180287 |
M9_LN, replicate 3, ATAC |
| GSM8180288 |
C6M9_LN, replicate 2, ATAC |
| GSM8180289 |
M9_TU_Tpex, replicate 3, ATAC |
| GSM8180290 |
M9_TU_Tex, replicate 1, ATAC |
| GSM8180291 |
C6M9_TU_Tpex, replicate 1, ATAC |
| GSM8180292 |
C6M9_TU_Tex, replicate 1, ATAC |
| GSM8180293 |
M9_LN, replicate 4, ATAC |
| GSM8180294 |
C6M9_LN, replicate 3, ATAC |
| GSM8180295 |
M9_TU_Tpex, replicate 4, ATAC |
| GSM8180296 |
M9_TU_Tex, replicate 2, ATAC |
| GSM8180297 |
C6M9_TU_Tpex, replicate 2, ATAC |
| GSM8180298 |
C6M9_TU_Tex, replicate 2, ATAC |
| GSM8180299 |
M9_TU_Tpex, replicate 5, ATAC |
| GSM8180300 |
C6M9_TU_Tpex, replicate 3, ATAC |
| GSM8180301 |
C6M9_LN, replicate 4, ATAC |
| GSM8180302 |
C6M9_TU_Tpex, replicate 4, ATAC |
| GSM8180303 |
C6M9_TU_Tpex, replicate 5, ATAC |
| GSM8180304 |
TU_M9 Day 12, WGBS |
| GSM8180305 |
TU_C6M9 Day 12, WGBS |
| GSM8180306 |
LN_M9 Day 8, replicate 1, WGBS |
| GSM8180307 |
LN_C6M9 Day 8, replicate 1, WGBS |
| GSM8180308 |
TU_M9_TIM3- Day 8, WGBS |
| GSM8180309 |
TU_M9_TIM3+ Day 8, WGBS |
| GSM8180310 |
TU_C6M9_TIM3- Day 8, WGBS |
| GSM8180311 |
TU_C6M9_TIM3+ Day 8, WGBS |
| GSM8180312 |
LN_M9 Day 8, replicate 2, WGBS |
| GSM8180313 |
LN_C6M9 Day 8, replicate 2, WGBS |
| GSM8180314 |
LN_M9 Day 8, replicate 3, WGBS |
| GSM8180315 |
LN_C6M9 Day 8, replicate 3, WGBS |
| GSM8180316 |
Naive, replicate 1, Tcf1 Cut&Tag |
| GSM8180317 |
Naive, replicate 2, Tcf1 Cut&Tag |
| GSM8180318 |
M9_LN, replicate 1, Tcf1 Cut&Tag |
| GSM8180319 |
M9_LN, replicate 2, Tcf1 Cut&Tag |
| GSM8180320 |
M9_TU_Tpex, replicate 1, Tcf1 Cut&Tag |
| GSM8180321 |
M9_TU_Tpex, replicate 2, Tcf1 Cut&Tag |
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| This SuperSeries is composed of the following SubSeries:
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| GSE262816 |
Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement [scRNAseq] |
| GSE262842 |
Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement [ATACseq] |
| GSE262843 |
Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement [WGBS] |
| GSE262844 |
Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement [CUT&Tag] |
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| Relations |
| BioProject |
PRJNA1093467 |
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