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| Status |
Public on Aug 06, 2024 |
| Title |
Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at the single-cell level |
| Organism |
Strongylocentrotus purpuratus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We use multi-omics (ATAC-seq, single cell RNA-seq and differential bulk RNA-seq) to increase resolution of the sea urchin posterior gut GRN for the cells expressing the ParaHox gene Sp-Pdx1.
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| Overall design |
Generation, analysis and integration of ATAC-seq, single cell and bulk RNA-seq data of 2 dpf Strongylocentrotus purpuratus embryo to draft gut GRN. Bulk RNAseq data was published previously and is not included here.
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| Contributor(s) |
Voronov D, Paganos P, Magri MS, Cuomo C, Maeso I, Gómez-Skarmeta JL, Arnone MI |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Apr 01, 2024 |
| Last update date |
Aug 06, 2024 |
| Contact name |
Maria Ina Arnone |
| E-mail(s) |
miarnone@szn.it
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| Organization name |
Stazione Zoologica Anton Dohrn
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| Department |
Biology and Evolution of Marine Organisms
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| Street address |
Villa Comunale 1
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| City |
Napoli |
| State/province |
NA |
| ZIP/Postal code |
80121 |
| Country |
Italy |
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| Platforms (2) |
| GPL23218 |
Illumina NextSeq 500 (Strongylocentrotus purpuratus) |
| GPL28450 |
Illumina HiSeq 4000 (Strongylocentrotus purpuratus) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA1094902 |
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