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Status |
Public on Apr 10, 2024 |
Title |
ChIP-seq, RNA-seq and BS-seq for WT and osino80 |
Organism |
Oryza sativa Japonica Group |
Experiment type |
Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation missing |
Has this study been published? Please login to update or notify GEO. |
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Submission date |
Apr 05, 2024 |
Last update date |
Apr 11, 2024 |
Contact name |
Wenhao Xie |
E-mail(s) |
20210700089@fudan.edu.cn
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Phone |
18005879367
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Organization name |
Fudan University
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Department |
School of Life Science
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Street address |
No. 2005, Songhu Road
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City |
Shanghai |
State/province |
Shanghai |
ZIP/Postal code |
200438 |
Country |
China |
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Platforms (2) |
GPL13834 |
Illumina HiSeq 2000 (Oryza sativa Japonica Group) |
GPL27860 |
Illumina NovaSeq 6000 (Oryza sativa Japonica Group) |
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Samples (75)
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GSM8189824 |
osino80_rep4, BS-seq |
GSM8189825 |
WT_rep1, BS-seq |
GSM8189826 |
WT_rep2, BS-seq |
GSM8189827 |
WT_rep3, BS-seq |
GSM8189828 |
WT_rep4, BS-seq |
GSM8189829 |
osino80_H2A, ChIP-seq |
GSM8189830 |
osino80_H2Aub_rep1, ChIP-seq |
GSM8189831 |
osino80_H2Aub_rep2, ChIP-seq |
GSM8189832 |
osino80_H2AZ_rep1, ChIP-seq |
GSM8189833 |
osino80_H2AZ_rep2, ChIP-seq |
GSM8189834 |
osino80_H3K27me3_rep1, ChIP-seq |
GSM8189835 |
osino80_H3K27me3_rep2, ChIP-seq |
GSM8189836 |
osino80_H3K27me3_rep3, ChIP-seq |
GSM8189837 |
osino80_H3K36me3_rep1, ChIP-seq |
GSM8189838 |
osino80_H3K36me3_rep2, ChIP-seq |
GSM8189839 |
osino80_H3K4me2_rep1, ChIP-seq |
GSM8189840 |
osino80_H3K4me2_rep2, ChIP-seq |
GSM8189841 |
osino80_H3K4me3_rep1, ChIP-seq |
GSM8189842 |
osino80_H3K4me3_rep2, ChIP-seq |
GSM8189843 |
osino80_H3K9me2_rep1, ChIP-seq |
GSM8189844 |
osino80_H3K9me2_rep2, ChIP-seq |
GSM8189845 |
osino80_H3K9me2_rep3, ChIP-seq |
GSM8189846 |
osino80_H3_rep1, ChIP-seq |
GSM8189847 |
osino80_H3_rep2, ChIP-seq |
GSM8189848 |
osino80_input_rep1, ChIP-seq |
GSM8189849 |
osino80_input_rep2, ChIP-seq |
GSM8189850 |
osino80_input_rep3, ChIP-seq |
GSM8189851 |
osino80_input_rep4, ChIP-seq |
GSM8189852 |
OsINO80-YFP_input_rep1, ChIP-seq |
GSM8189853 |
OsINO80-YFP_input_rep2, ChIP-seq |
GSM8189854 |
OsINO80-YFP_YFP_rep1, ChIP-seq |
GSM8189855 |
OsINO80-YFP_YFP_rep2, ChIP-seq |
GSM8189856 |
WT_H2A, ChIP-seq |
GSM8189857 |
WT_H2Aub_rep1, ChIP-seq |
GSM8189858 |
WT_H2Aub_rep2, ChIP-seq |
GSM8189859 |
WT_H2AZ_rep1, ChIP-seq |
GSM8189860 |
WT_H2AZ_rep2, ChIP-seq |
GSM8189861 |
WT_H3K27me3_rep1, ChIP-seq |
GSM8189862 |
WT_H3K27me3_rep2, ChIP-seq |
GSM8189863 |
WT_H3K27me3_rep3, ChIP-seq |
GSM8189864 |
WT_H3K36me3_rep1, ChIP-seq |
GSM8189865 |
WT_H3K36me3_rep2, ChIP-seq |
GSM8189866 |
WT_H3K4me2_rep1, ChIP-seq |
GSM8189867 |
WT_H3K4me2_rep2, ChIP-seq |
GSM8189868 |
WT_H3K4me3_rep1, ChIP-seq |
GSM8189869 |
WT_H3K4me3_rep2, ChIP-seq |
GSM8189870 |
WT_H3K9me2_rep1, ChIP-seq |
GSM8189871 |
WT_H3K9me2_rep2, ChIP-seq |
GSM8189872 |
WT_H3K9me2_rep3, ChIP-seq |
GSM8189873 |
WT_H3_rep1, ChIP-seq |
GSM8189874 |
WT_H3_rep2, ChIP-seq |
GSM8189875 |
WT_input_for_YFP_rep1, ChIP-seq |
GSM8189876 |
WT_input_for_YFP_rep2, ChIP-seq |
GSM8189877 |
WT_input_rep1, ChIP-seq |
GSM8189878 |
WT_input_rep2, ChIP-seq |
GSM8189879 |
WT_input_rep3, ChIP-seq |
GSM8189880 |
WT_input_rep4, ChIP-seq |
GSM8189881 |
WT_YFP_rep1, ChIP-seq |
GSM8189882 |
WT_YFP_rep2, ChIP-seq |
GSM8189883 |
YFP_input_rep1, ChIP-seq |
GSM8189884 |
YFP_input_rep2, ChIP-seq |
GSM8189885 |
YFP_input_rep3, ChIP-seq |
GSM8189886 |
YFP_YFP_rep1, ChIP-seq |
GSM8189887 |
YFP_YFP_rep2, ChIP-seq |
GSM8189888 |
YFP_YFP_rep3, ChIP-seq |
GSM8189889 |
YFP_YFP_rep4, ChIP-seq |
GSM8189890 |
osino80_rep1, RNA-seq |
GSM8189891 |
osino80_rep2, RNA-seq |
GSM8189892 |
osino80_rep3, RNA-seq |
GSM8189893 |
WT_rep1, RNA-seq |
GSM8189894 |
WT_rep2, RNA-seq |
GSM8189895 |
WT_rep3, RNA-seq |
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This SuperSeries is composed of the following SubSeries: |
GSE225483 |
BSseq for WT and osino80 |
GSE225484 |
ChIP-seq for OsINO80 location using YFP antibody, and ChIP-seq for WT and osino80 using H3, H2A, H2A.Z, H2Aub, H3K9me2, H3K4me2, H3K4me3, H3K27me3, and H3K36me3 antibodies |
GSE225485 |
RNAseq for WT and osino80 |
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Relations |
BioProject |
PRJNA1096731 |
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