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| Status |
Public on Apr 15, 2024 |
| Title |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38781959 |
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| Submission date |
Apr 09, 2024 |
| Last update date |
Aug 02, 2024 |
| Contact name |
Clémence Henon |
| E-mail(s) |
clemence.henon@gustaveroussy.fr
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| Organization name |
Gustave Roussy
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| Street address |
114 rue Edouard Vaillant
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| City |
Villejuif |
| ZIP/Postal code |
94800 |
| Country |
France |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (72)
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| GSM8193969 |
GR2 patient, site 4, scRNAseq |
| GSM8193970 |
GR4 patient, scRNAseq |
| GSM8193971 |
GR4 patient, post chemotherapy, scRNAseq |
| GSM8193972 |
IC patient, site 1, scRNAseq |
| GSM8193973 |
IC patient, site 2, scRNAseq |
| GSM8193974 |
IC patient, site 3, scRNAseq |
| GSM8193975 |
GR7 patient, site 1, scRNAseq |
| GSM8193976 |
GR7 patient, site 2, scRNAseq |
| GSM8193977 |
GR11 patient, snMultiome |
| GSM8279061 |
JN-DSRCT-1, assay_1, input |
| GSM8279062 |
JN-DSRCT, assay_1, isotype, R1, ChIP-seq |
| GSM8279063 |
JN-DSRCT, assay_1, isotype, R2, ChIP-seq |
| GSM8279064 |
JN-DSRCT, assay_1, WT1, R1, ChIP-seq |
| GSM8279065 |
JN-DSRCT, assay_1, WT1, R2, ChIP-seq |
| GSM8279066 |
JN-DSRCT-1, assay_2, siCTRL, input |
| GSM8279067 |
JN-DSRCT-1, assay_2, siEWS-WT1, input |
| GSM8279068 |
JN-DSRCT, assay_2, siCTRL, H3K27ac, ChIP-seq |
| GSM8279069 |
JN-DSRCT, assay_2, siEWS-WT1, H3K27ac, ChIP-seq |
| GSM8279070 |
JN-DSRCT, assay_2, siCTRL, H3K9ac, ChIP-seq |
| GSM8279071 |
JN-DSRCT, assay_2, siEWS-WT1, H3K9ac, ChIP-seq |
| GSM8279072 |
JN-DSRCT-1, siCTRL, R1, RNA-seq |
| GSM8279073 |
JN-DSRCT-1, siCTRL, R2, RNA-seq |
| GSM8279074 |
JN-DSRCT-1, siCTRL, R3, RNA-seq |
| GSM8279075 |
JN-DSRCT-1, siEWSR1::WT1, R1, RNA-seq |
| GSM8279076 |
JN-DSRCT-1, siEWSR1::WT1, R2, RNA-seq |
| GSM8279077 |
JN-DSRCT-1, siEWSR1::WT1, R3, RNA-seq |
| GSM8279078 |
P1 |
| GSM8279079 |
P2 |
| GSM8279080 |
P3 |
| GSM8279081 |
P4 |
| GSM8279082 |
P5 |
| GSM8279083 |
P6 |
| GSM8279084 |
P7 |
| GSM8279085 |
P8 |
| GSM8279086 |
P9 |
| GSM8279087 |
P10 |
| GSM8279088 |
P11 |
| GSM8279089 |
P12 |
| GSM8279090 |
P13 |
| GSM8279091 |
P14 |
| GSM8279092 |
P15 |
| GSM8279093 |
P16 |
| GSM8279094 |
P17 |
| GSM8279095 |
P18 |
| GSM8279096 |
P19 |
| GSM8279097 |
P20 |
| GSM8279098 |
P21 |
| GSM8279099 |
P22 |
| GSM8279100 |
P23 |
| GSM8279101 |
P24 |
| GSM8279102 |
P25 |
| GSM8279103 |
P26 |
| GSM8279104 |
P27 |
| GSM8279105 |
P28 |
| GSM8279106 |
P29 |
| GSM8279107 |
GR2_site4, Visium |
| GSM8279108 |
GR4, Visium |
| GSM8279109 |
GR4_PC, Visium |
| GSM8279110 |
GR7_site2, Visium |
| GSM8279111 |
IC1, Visium |
| GSM8279112 |
GR11_site1, Visium |
| GSM8279113 |
JN-DSRCT-1, no_si, R1, ATAC |
| GSM8279114 |
JN-DSRCT-1, no_si, R2, ATAC |
| GSM8279115 |
JN-DSRCT-1, siCTRL, R1, ATAC |
| GSM8279116 |
JN-DSRCT-1, siCTRL, R2, ATAC |
| GSM8279117 |
JN-DSRCT-1, siCCND1, R1, ATAC |
| GSM8279118 |
JN-DSRCT-1, siCCND1, R2, ATAC |
| GSM8279119 |
JN-DSRCT-1, siEWSR1::WT1, R1, ATAC |
| GSM8279120 |
JN-DSRCT-1, siEWSR1::WT1, R2, ATAC |
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| This SuperSeries is composed of the following SubSeries:
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| GSE263521 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [scRNA-Seq] |
| GSE263522 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [snMultiome] |
| GSE267803 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [ChIP-seq] |
| GSE267804 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Cell_line_RNA-seq] |
| GSE267805 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Patient_bulkRNA-seq] |
| GSE267806 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics] |
| GSE267807 |
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [ATAC-seq] |
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| Relations |
| BioProject |
PRJNA1097960 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE263523_RAW.tar |
14.7 Gb |
(http)(custom) |
TAR (of BIGWIG, CSV, JPG, JSON, MTX, PNG, TSV) |
SRA Run Selector |
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