|
| Status |
Public on May 19, 2024 |
| Title |
The role of CD4 T cells in tumor-specific CD8 T cell reprogramming [ATAC-Seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ATAC-seq analysis of tumor-specific CD8 T cells from tumors with and without tumor-specific CD4 T cells
|
| |
|
| Overall design |
T cells were sorted by flow cytometry and ATAC-seq was performed.
|
| |
|
| Contributor(s) |
Schietinger A, Espinosa Carrasco G, Zumbo P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Apr 25, 2024 |
| Last update date |
May 20, 2024 |
| Contact name |
Andrea Schietinger |
| Organization name |
Memorial Sloan Kettering Cancer Center
|
| Department |
Immunology
|
| Street address |
1275 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (6)
|
| GSM8230003 |
Sort-purified (CD8/CD45.1) TCR OT1 CD8 T cells from B16-OVA-GP61 tumors (no TCR SMARTA CD4 T cells) replicate#1 [ATAC] |
| GSM8230004 |
Sort-purified (CD8/CD45.1) TCR OT1 CD8 T cells from B16-OVA-GP61 tumors (no TCR SMARTA CD4 T cells) replicate#2 [ATAC] |
| GSM8230005 |
Sort-purified (CD8/CD45.1) TCR OT1 CD8 T cells from B16-OVA-GP61 tumors (no TCR SMARTA CD4 T cells) replicate#3 [ATAC] |
| GSM8230006 |
Sort-purified (CD8/CD45.1) TCR OT1 CD8 T cells from B16-OVA-GP61 tumors (with TCR SMARTA CD4 T cells) replicate#1 [ATAC] |
| GSM8230007 |
Sort-purified (CD8/CD45.1) TCR OT1 CD8 T cells from B16-OVA-GP61 tumors (with TCR SMARTA CD4 T cells) replicate#2 [ATAC] |
| GSM8230008 |
Sort-purified (CD8/CD45.1) TCR OT1 CD8 T cells from B16-OVA-GP61 tumors (with TCR SMARTA CD4 T cells) replicate#3 [ATAC] |
|
| Relations |
| BioProject |
PRJNA1104535 |
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