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Status |
Public on Jan 12, 2012 |
Title |
Genome-scale reconstruction of the PurR regulon reveals its role in the adenine stimulon of Escherichia coli K-12 MG1655 |
Platform organisms |
Escherichia coli; Escherichia coli str. K-12 substr. MG1655 |
Sample organism |
Escherichia coli str. K-12 substr. MG1655 |
Experiment type |
Expression profiling by array Genome binding/occupancy profiling by genome tiling array
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
21572102 |
|
Submission date |
Jan 12, 2011 |
Last update date |
Mar 08, 2019 |
Contact name |
Bernhard Palsson |
E-mail(s) |
palsson@ucsd.edu
|
Phone |
858-534-5668
|
Fax |
858-822-3120
|
URL |
http://systemsbiology.ucsd.edu
|
Organization name |
UCSD
|
Department |
Bioengineering
|
Lab |
Systems Biology Research Group
|
Street address |
9500 Gilman Dr.
|
City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92122 |
Country |
USA |
|
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Platforms (2) |
GPL3154 |
[E_coli_2] Affymetrix E. coli Genome 2.0 Array |
GPL8387 |
UCSD, NimbleGen_E_coli_MG1655_371K Tiling_Array_2005 |
|
Samples (12)
|
GSM654474 |
Wild type, M9 minimal medium, 1 |
GSM654475 |
Wild type, M9 minimal medium, 2 |
GSM654476 |
purR deletion mutant, M9 minimal medium, 1 |
GSM654477 |
purR deletion mutant, M9 minimal medium, 2 |
GSM654478 |
Wild type, M9 minimal medium with with 100 μg/ml adenine, 1 |
GSM654479 |
Wild type, M9 minimal medium with with 100 μg/ml adenine, 2 |
GSM654480 |
purR deletion mutant, M9 minimal medium with 100 μg/ml adenine, 1 |
GSM654481 |
purR deletion mutant, M9 minimal medium with 100 μg/ml adenine, 2 |
GSM654485 |
PurR_Adenine_1 |
GSM654486 |
PurR_Adenine_2 |
GSM654487 |
PurR_glucose_1 |
GSM654488 |
PurR_glucose_2 |
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This SuperSeries is composed of the following SubSeries: |
GSE26588 |
Transcriptome analysis of E. coli MG1655 |
GSE26589 |
ChIP-chip of E. coli K-12 MG1655 with antibody against PurR-8myc under various conditions. |
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Relations |
BioProject |
PRJNA136185 |