|
| Status |
Public on Jan 12, 2012 |
| Title |
Genome-scale reconstruction of the PurR regulon reveals its role in the adenine stimulon of Escherichia coli K-12 MG1655 |
| Platform organisms |
Escherichia coli; Escherichia coli str. K-12 substr. MG1655 |
| Sample organism |
Escherichia coli str. K-12 substr. MG1655 |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
21572102 |
| |
| Submission date |
Jan 12, 2011 |
| Last update date |
Mar 08, 2019 |
| Contact name |
Bernhard Palsson |
| E-mail(s) |
palsson@ucsd.edu
|
| Phone |
858-534-5668
|
| Fax |
858-822-3120
|
| URL |
http://systemsbiology.ucsd.edu
|
| Organization name |
UCSD
|
| Department |
Bioengineering
|
| Lab |
Systems Biology Research Group
|
| Street address |
9500 Gilman Dr.
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92122 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL3154 |
[E_coli_2] Affymetrix E. coli Genome 2.0 Array |
| GPL8387 |
UCSD, NimbleGen_E_coli_MG1655_371K Tiling_Array_2005 |
|
| Samples (12)
|
| GSM654474 |
Wild type, M9 minimal medium, 1 |
| GSM654475 |
Wild type, M9 minimal medium, 2 |
| GSM654476 |
purR deletion mutant, M9 minimal medium, 1 |
| GSM654477 |
purR deletion mutant, M9 minimal medium, 2 |
| GSM654478 |
Wild type, M9 minimal medium with with 100 μg/ml adenine, 1 |
| GSM654479 |
Wild type, M9 minimal medium with with 100 μg/ml adenine, 2 |
| GSM654480 |
purR deletion mutant, M9 minimal medium with 100 μg/ml adenine, 1 |
| GSM654481 |
purR deletion mutant, M9 minimal medium with 100 μg/ml adenine, 2 |
| GSM654485 |
PurR_Adenine_1 |
| GSM654486 |
PurR_Adenine_2 |
| GSM654487 |
PurR_glucose_1 |
| GSM654488 |
PurR_glucose_2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE26588 |
Transcriptome analysis of E. coli MG1655 |
| GSE26589 |
ChIP-chip of E. coli K-12 MG1655 with antibody against PurR-8myc under various conditions. |
|
| Relations |
| BioProject |
PRJNA136185 |
Less...
More...