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Series GSE267205 Query DataSets for GSE267205
Status Public on Jun 17, 2024
Title STARR-seq reporter activity of plasmid libraries delivered to mouse liver by hydrodynamic injection: In vivo MPRA assay for enhancer activity
Organisms Mus musculus; synthetic construct
Experiment type Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
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NIH grant(s)
Grant ID Grant title Affiliation Name
R01 DK121998 Growth Hormone Regulation of Sex Differences in Liver Metabolism BOSTON UNIVERSITY CHARLES RIVER CAMPUS David J Waxman
R01 ES024421 Xenobiotic-responsive hepatic long non-coding RNAs BOSTON UNIVERSITY CHARLES RIVER CAMPUS David J Waxman
Submission date May 10, 2024
Last update date Jun 17, 2024
Contact name David J. Waxman
E-mail(s) djw@bu.edu
Organization name Boston University
Department Department of Biology and Bioinformatics Program
Street address 5 Cummington Mall
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19604 Illumina HiSeq 2500 (synthetic construct)
Samples (39)
GSM8258882 TCPOBOP_1d_Male_STARRTYC3/7_RNA_replicate1
GSM8258883 TCPOBOP_1d_Male_STARRTYC3/7_RNA_replicate2
GSM8258884 corn oil_1d_Male_STARRTYC3/7_RNA_replicate1
This SuperSeries is composed of the following SubSeries:
GSE267041 STARR-seq library profiling 100 defined open chromatin regions (‘focused library’) in livers of male and female mice treated with the nuclear receptor CAR (Nr1i3) agonist ligand TCPOBOP.
GSE267046 Global STARR-seq library profiling of open chromatin regions in livers of mice treated with the nuclear receptor CAR (Nr1i3) agonist ligand TCPOBOP, in livers of control male mice and in livers of control female mice. [G187_global]
GSE267075 STARR-seq enhancer activity determined following hydrodynamic delivery of STARR-seq plasmid library to mouse liver using three different STARR-seq promoters: Super Core promoter, ORI promoter, and minimal Albumin promoter [G173]
Relations
BioProject PRJNA1110236

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