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| Status |
Public on May 22, 2024 |
| Title |
Microglia are not necessary for maintenance of blood-brain barrier properties in health, but PLX5622 alters brain endothelial cholesterol metabolism (Brain Endo Bulk Seq) |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Microglia are resident immune cells of the central nervous system, yet their functions far exceed those related to immunology. From pruning neural synapses during development to preventing excessive neural activity throughout life, microglia are intimately involved in the brain’s most basic processes. Studies have reported a close interaction between microglia and endothelial cells, as well as both helpful and harmful roles for microglia at the blood-brain barrier (BBB) in the context of disease. However, much less work has been done to understand microglia-endothelial cell interactions in the healthy brain. Here, we aim to determine the role of microglia at the healthy BBB. We used the colony-stimulating factor 1 receptor (CSF1R) inhibitor PLX5622 to deplete microglia and analyzed BBB ultrastructure, permeability, and transcriptome. Interestingly, we found that, despite their direct contact with endothelial cells, microglia are not necessary for maintenance of BBB structure, function, or gene expression in the healthy brain. However, we found that PLX5622 treatment alters brain endothelial cholesterol metabolism, and this effect was independent from microglial depletion, suggesting PLX5622 has off-target effects on brain vasculature.
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| Overall design |
To determine how microglial depletion affects brain vasculature, we put C57BL6 mice on PLX5622 diet or control diet for one month. PLX5622 is a CSF1R inhibitor that eliminates ~95% of microglia. We then acutely isolated brain endothelial cells for gene expression analysis.
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| Contributor(s) |
Profaci CP, Harvey SS, Daneman R |
| Citation missing |
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| Submission date |
May 15, 2024 |
| Last update date |
May 22, 2024 |
| Contact name |
Caterina Profaci |
| Organization name |
University of California, San Diego
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| Street address |
9500 Gilman Drive
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| City |
La Jolla |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (10)
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| GSM8269460 |
control diet, female, biol rep 1 |
| GSM8269461 |
control diet, female, biol rep 2 |
| GSM8269462 |
PLX5622 diet, male, biol rep 1 |
| GSM8269463 |
PLX5622 diet, male, biol rep 2 |
| GSM8269464 |
PLX5622 diet, male, biol rep 3 |
| GSM8269465 |
PLX5622 diet, female, biol rep 1 |
| GSM8269466 |
PLX5622 diet, female, biol rep 2 |
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| Relations |
| BioProject |
PRJNA1111908 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE267592_PLX_Brain_Endo_Bulk_Seq.xlsx |
5.0 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
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