|
| Status |
Public on Jan 21, 2011 |
| Title |
Encyclopedia of C. elegans 3' UTRs and their regulatory elements - 454 sequencing of RACE clones |
| Project |
modENCODE
|
| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
|
| |
|
| Overall design |
Use RACE clones to identify 3'UTR isoforms via deep sequencing.
|
| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
| |
|
| Contributor(s) |
Piano F, Mangone M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA168961 |
| |
| Submission date |
Jan 21, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Kristin C Gunsalus |
| URL |
http://biology.as.nyu.edu/object/research.genomics
|
| Organization name |
NYU Center for Genomics and Systems Biology
|
| Department |
Biology
|
| Lab |
Gunsalus
|
| Street address |
1009 Silver, MC 5181
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10003 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9085 |
454 GS FLX (Caenorhabditis elegans) |
|
| Samples (2) |
| GSM659170 |
RNA_whole_worm_mixed_stages [kourosh] |
| GSM675693 |
RNA_whole_worm_mixed_stages [mskcc] |
|
| Relations |
| SRA |
SRP005427 |
