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Series GSE269989 Query DataSets for GSE269989
Status Public on Jun 21, 2024
Title A HigB-like toxin induces non-replicating Salmonella inside macrophages by inhibiting RNase III-dependent rRNA maturation [sehA_RNA-Seq]
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Experiment type Expression profiling by high throughput sequencing
Summary Many bacteria are often resistant to antibiotic treatment and drugs because, even if these drugs are effective, bacteria can slow down their growth rate and thus attenuate the effectiveness of the drug. A similar growth-rate control is detected in pathogenic bacteria that infect and persist inside their hosts. The bacterial growth rate within host cells can be regulated by multiple signaling pathways, most of which are still unknown. A toxin-antitoxin (TA) system is one of the candidates for controlling bacterial growth because the TA system could slow down growth by expressing a toxin component. The toxin protein can be neutralized by the antitoxin component, serving as a non-heritable phenotypic switch for growth rate. In this study, we investigated a type II toxin-antitoxin system from the intracellular bacterial pathogen Salmonella enterica serovar Typhimurium. We characterized residues required for toxin’s activity and a potential mechanism of the toxin by searching for its target via bacterial two-hybrid screening. Understanding the underlying mechanism of toxin-mediated persister formation and growth rate control within host cells will provide a new alternative to treat antibiotic resistant bacteria or intracellular bacteria surviving within host cells.
 
Overall design We used RNA-seq to determine if the profile of mono-phosphated-OH and mono-phosphated mRNA differed between the sehA mutant and a strain that overexpressed sehA by arabinose induction.
 
Contributor(s) Choi S, Cho Y, Baek S, Choi E, Kim Y, Lee E
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Submission date Jun 16, 2024
Last update date Jun 21, 2024
Contact name Yong-Joon Cho
Organization name Seoul National University
Street address 1 Gwanak-ro, Gwanak-gu
City Seoul
ZIP/Postal code 08826
Country South Korea
 
Platforms (1)
GPL32269 Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S)
Samples (4)
GSM8332116 sehA-OH-ara-negative
GSM8332117 sehA-OH-ara-positive
GSM8332118 sehA-mono-P-ara-negative
Relations
BioProject PRJNA1124563

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Supplementary file Size Download File type/resource
GSE269989_RAW.tar 8.2 Mb (http)(custom) TAR (of BEDGRAPH)
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Raw data are available in SRA

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