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Series GSE271247 Query DataSets for GSE271247
Status Public on Jul 02, 2024
Title Sequential redox vulnerabilities with therapeutic potential during the acquisition of drug resistance in BRAFV600E lung adenocarcinoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The current targeted therapy for lung cancer patients harbouring BRAFV600E alterations consists of a dual blockade of RAF and MEK kinases often combining dabrafenib with trametinib (D/T). This regimen results in extended survival when compared to single agent treatments but, as with other targeted therapies, disease progression is unavoidable. There is limited information of how BRAFV600E-driven lung adenocarcinomas adapt to this targeted treatment and persist before clinical relapse is detected. At this point, a significant fraction of these resistant tumours display mutations in other members of the RAS-ERK pathway and counteract the inhibitors effect by reactivating oncogenic signalling. We demonstrate here that oxidative stress together with the concomitant induction of antioxidant responses is a prominent and early feature boosted by D/T treatment. However, the nature of the oxidative damage and the choice of redox detoxification systems elicited by cancer cells display substantial differences during the process leading to the onset of drug resistance. While persister cells suffer from lipid peroxidation and strongly rely on GPX4 to prevent ferroptosis-driven cell death, D/T resistant tumours harbouring NRAS secondary mutations enhance cystine transport to boost antioxidant responses. Accordingly, timely inhibition of these detox programs by GPX4 or HDAC inhibitors decrease resistant cell viability and extend therapeutic efficacy.
 
Overall design HCC364-DTP and DTEP were generated by treating HCC364 cells with 250 nM dabrafenib and 5 nM trametinib for 3 and 40 weeks, respectively. Total RNA were extracted and submitted to Illumina RNA sequencing (30M single reads 50 bases).
Web link https://www.cell.com/cell-reports-medicine/fulltext/S2666-3791(24)00377-X?
 
Contributor(s) Nokin M, Darbo E, SantamarĂ­a D, Ambrogio C
Citation(s) 39094577
Submission date Jul 01, 2024
Last update date Oct 01, 2024
Contact name ELodie Darbo
Organization name University of Bordeaux
Department INSERM
Lab UMR1218
Street address 229 cours de l'Argonne
City Bordeaux
ZIP/Postal code 33076
Country France
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (3)
GSM8372196 ds.3w
GSM8372197 ds.L
GSM8372198 ds.P
Relations
BioProject PRJNA1130517

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE271247_RAW.tar 4.9 Mb (http)(custom) TAR (of TXT)
GSE271247_raw_counts_time_course.tab.gz 207.6 Kb (ftp)(http) TAB
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Raw data are available in SRA

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