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| Status |
Public on Mar 07, 2012 |
| Title |
Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis |
| Platform organisms |
Zea mays; Aspergillus flavus; Aspergillus oryzae |
| Sample organism |
Aspergillus flavus |
| Experiment type |
Genome variation profiling by array
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| Summary |
Aspergillus flavus is the major producer of carcinogenic aflatoxins in crops worldwide. Natural populations of A. flavus show tremendous variation in aflatoxin production some of which can be attributed to extreme environmental conditions (e.g., drought), differential regulation of the aflatoxin biosynthetic pathway, missing cluster genes or loss-of-function mutations. Understanding the evolutionary processes that generate genetic diversity in A. flavus may also explain quantitative and qualitative differences in aflatoxigenicity. Several population studies provide indirect evidence of recombination in the aflatoxin gene cluster and genome-wide, using multilocus genealogical approaches. More recently A. flavus has been shown to be functionally heterothallic and capable of sexual reproduction in laboratory crosses. In the present study, we characterize the progeny from nine A. flavus crosses and show that crossovers in the aflatoxin cluster coincide with inferred recombination blocks and hotspots in natural populations, which suggests that recombination in the cluster is primarily driven by sex. Moreover, we show that a single crossover event in the cluster can restore aflatoxigenicity, which is significant as mycotoxin production in A. flavus is highly heritable. aCGH was used to corroborate inferences from cluster-based MLSTs and to possibly identify additional crosovers within the cluster.
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| Overall design |
aCGH comparison between 3 strains of A. flavus: 2 parental (P) and 1 progeny (F1) analyzed at the probe level. A total of 9 trio comparisons were made from a total of 18 isolates analyzed by aCGH. Trio comparisons are as follows: IC278 (P), IC1179 (P) and IC1650 (F1); IC201 (P), IC310 (P) and IC1719 (F1); IC307 (P), IC308 (P) and IC1751 (F1); IC277 (P), IC311 (P) and IC1766 (F1); IC277 (P), IC311 (P) and IC1775 (F1); IC244 (P), IC277 (P) and IC2205 (F1); IC244 (P), IC277 (P) and IC2207 (F1); IC301 (P), IC1179 (P) and IC2171 (F1); and finally IC244 (P), IC277 (P) and IC2209 (F1).
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| Contributor(s) |
Olarte RA, Horn BW, Dorner JW, Monacell JT, Singh R, Stone EA, Carbone I |
| Citation(s) |
22212063 |
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| Submission date |
Feb 24, 2011 |
| Last update date |
Jun 06, 2012 |
| Contact name |
Ignazio Carbone |
| E-mail(s) |
ignazio_carbone@ncsu.edu
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| Phone |
919-513-4866
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| Organization name |
North Carolina State University - Center for Integrated Fungal Research
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| Department |
Plant Pathology
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| Lab |
Ignazio Carbone
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| Street address |
851 Main Campus Drive, Suite 233
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| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27606 |
| Country |
USA |
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| Platforms (1) |
| GPL13221 |
NCSU Payne_Aspergillus Flavus_22683_AFLAVUSa520391F [probe-level] |
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| Samples (19)
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| Relations |
| BioProject |
PRJNA138593 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE27484_RAW.tar |
40.6 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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