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| Status |
Public on Oct 10, 2024 |
| Title |
Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy. |
| Organism |
Mus musculus |
| Experiment type |
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Contributor(s) |
Kang TG, Youngblood B, Zebley C |
| Citation(s) |
39388542 |
| |
| Submission date |
Aug 14, 2024 |
| Last update date |
Oct 11, 2024 |
| Contact name |
Tian Mi |
| E-mail(s) |
tmi@stjude.org
|
| Organization name |
St. Jude Children's Research Hospital
|
| Department |
Immunology
|
| Street address |
262 Danny Thomas Pl MS351
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (85)
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| GSM8459564 |
Dnmt3a D30 rep2, WGBS |
| GSM8459565 |
Tet2 D30 rep1, WGBS |
| GSM8459566 |
Tet2 D30 rep2, WGBS |
| GSM8459567 |
Asxl1 D30 rep1, WGBS |
| GSM8459568 |
Asxl1 D30 rep2, WGBS |
| GSM8459569 |
Rosa, replicate 1, ATAC |
| GSM8459570 |
Rosa, replicate 2, ATAC |
| GSM8459571 |
Asxl1, replicate 1, ATAC |
| GSM8459572 |
Asxl1, replicate 2, ATAC |
| GSM8459573 |
Rosa Ly108, replicate 1, ATAC |
| GSM8459574 |
Rosa Ly108, replicate 2, ATAC |
| GSM8459575 |
Rosa Tim3, replicate 1, ATAC |
| GSM8459576 |
Rosa Tim3, replicate 2, ATAC |
| GSM8459577 |
Asxl1 Ly108, replicate 1, ATAC |
| GSM8459578 |
Asxl1 Ly108, replicate 2, ATAC |
| GSM8459579 |
Asxl1 Ly108, replicate 3, ATAC |
| GSM8459580 |
Asxl1 Ly108, replicate 4, ATAC |
| GSM8459581 |
Asxl1 Tim3, replicate 1, ATAC |
| GSM8459582 |
Asxl1 Tim3, replicate 2, ATAC |
| GSM8459583 |
Asxl1 Tim3, replicate 3, ATAC |
| GSM8459584 |
Asxl1 Tim3, replicate 4, ATAC |
| GSM8459585 |
Rosa, replicate 1, RNA seq |
| GSM8459586 |
Dnmt3a, replicate 1, RNA seq |
| GSM8459587 |
Dnmt3a, replicate 2, RNA seq |
| GSM8459588 |
Asxl1, replicate 1, RNA seq |
| GSM8459589 |
Dnmt3a, replicate 3, RNA seq |
| GSM8459590 |
Dnmt3a, replicate 4, RNA seq |
| GSM8459591 |
Tet2, replicate 1, RNA seq |
| GSM8459592 |
Tet2, replicate 2, RNA seq |
| GSM8459593 |
Asxl1, replicate 2, RNA seq |
| GSM8459594 |
Rosa, replicate 2, RNA seq |
| GSM8459595 |
Rosa, replicate 3, RNA seq |
| GSM8459596 |
Rosa, replicate 4, RNA seq |
| GSM8459597 |
Rosa, replicate 5, RNA seq |
| GSM8459598 |
Tet2, replicate 3, RNA seq |
| GSM8459599 |
Tet2, replicate 4, RNA seq |
| GSM8459600 |
Asxl1, replicate 3, RNA seq |
| GSM8459601 |
Asxl1, replicate 4, RNA seq |
| GSM8459602 |
Naive, Cut&Tag replicate 1, H3K27me3 |
| GSM8459603 |
Asxl1, Cut&Tag replicate 1, H3K27me3 |
| GSM8459604 |
Asxl1, Cut&Tag replicate 2, H3K27me3 |
| GSM8459605 |
Rosa, Cut&Tag replicate 1, H3K27me3 |
| GSM8459606 |
Rosa, Cut&Tag replicate 2, H3K27me3 |
| GSM8459607 |
Rosa, Cut&Tag replicate 3, H3K27me3 |
| GSM8459608 |
Rosa, Cut&Tag replicate 4, H3K27me3 |
| GSM8459609 |
Asxl1, Cut&Tag replicate 3, H3K27me3 |
| GSM8459610 |
Asxl1, Cut&Tag replicate 4, H3K27me3 |
| GSM8459611 |
Asxl1, Cut&Tag replicate 5, H3K27me3 |
| GSM8459612 |
Rosa, Cut&Tag replicate 1, H2AK119Ub |
| GSM8459613 |
Rosa, Cut&Tag replicate 2, H2AK119Ub |
| GSM8459614 |
Asxl1 Cut&Tag replicate 1, H2AK119Ub |
| GSM8459615 |
Asxl1 Cut&Tag replicate 2, H2AK119Ub |
| GSM8459616 |
Asxl1 Cut&Tag replicate 3, H2AK119Ub |
| GSM8459617 |
Naive, Cut&Tag replicate 1, H3K4me3 |
| GSM8459618 |
Naive, Cut&Tag replicate 2, H3K4me3 |
| GSM8459619 |
Naive, Cut&Tag replicate 3, H3K4me3 |
| GSM8459620 |
Naive, Cut&Tag replicate 4, H3K4me3 |
| GSM8459621 |
Rosa, Cut&Tag replicate 1, H3K4me3 |
| GSM8459622 |
Rosa, Cut&Tag replicate 2, H3K4me3 |
| GSM8459623 |
Asxl1, Cut&Tag replicate 1, H3K4me3 |
| GSM8459624 |
Rosa, Cut&Tag replicate 3, H3K4me3 |
| GSM8459625 |
Rosa, Cut&Tag replicate 4, H3K4me3 |
| GSM8459626 |
Rosa, Cut&Tag replicate 5, H3K4me3 |
| GSM8459627 |
Asxl1, Cut&Tag replicate 2, H3K4me3 |
| GSM8459628 |
Asxl1, Cut&Tag replicate 3, H3K4me3 |
| GSM8459629 |
Asxl1, Cut&Tag replicate 4, H3K4me3 |
| GSM8459630 |
Naive, Cut&Tag replicate 1, H3K9ac |
| GSM8459631 |
Naive, Cut&Tag replicate 2, H3K9ac |
| GSM8459632 |
Naive, Cut&Tag replicate 3, H3K9ac |
| GSM8459633 |
Naive, Cut&Tag replicate 4, H3K9ac |
| GSM8459634 |
Rosa, Cut&Tag replicate 1, H3K9ac |
| GSM8459635 |
Rosa, Cut&Tag replicate 2, H3K9ac |
| GSM8459636 |
Asxl1, Cut&Tag replicate 1, H3K9ac |
| GSM8459637 |
Asxl1, Cut&Tag replicate 2, H3K9ac |
| GSM8459638 |
Rosa, replicate 1, scRNAseq |
| GSM8459639 |
Rosa, replicate 2, scRNAseq |
| GSM8459640 |
Dnmt3a, replicate 1, scRNAseq |
| GSM8459641 |
Dnmt3a, replicate 2, scRNAseq |
| GSM8459642 |
Tet2, replicate 1, scRNAseq |
| GSM8459643 |
Tet2, replicate 2, scRNAseq |
| GSM8459644 |
Asxl1, replicate 1, scRNAseq |
| GSM8459645 |
Asxl1, replicate 2, scRNAseq |
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| This SuperSeries is composed of the following SubSeries:
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| GSE274862 |
Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy [Bisulfite-Seq] |
| GSE274863 |
Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy [ATAC-seq] |
| GSE274864 |
Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy [RNA-seq] |
| GSE274865 |
Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy [CUT&Tag] |
| GSE274866 |
Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy [scRNA-seq] |
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| Relations |
| BioProject |
PRJNA1148209 |
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